Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 4.7e-79 297.7 146 100.0
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 3.3e-64 248.4 131 92.4
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 1.6e-63 246.1 131 91.6
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 2.1e-63 245.7 131 91.6
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 1.4e-62 243.0 131 90.8
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 1.8e-62 242.7 131 90.8
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 2.4e-62 242.3 131 90.8
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.4e-62 242.3 131 90.8
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.4e-62 242.3 131 90.8
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 2.4e-62 242.3 131 89.3
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 3.1e-62 241.9 126 93.7
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 3.1e-62 241.9 131 89.3
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 4.0e-62 241.5 130 90.8
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 4.0e-62 241.5 126 92.9
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 5.3e-62 241.1 131 90.1
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 5.3e-62 241.1 127 92.1
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 6.9e-62 240.7 126 92.9
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 9.0e-62 240.4 131 89.3
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 1.5e-61 239.6 127 90.6
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.5e-61 239.6 127 90.6
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.5e-61 239.6 133 87.2
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.5e-61 239.6 127 90.6
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 1.5e-61 239.6 127 90.6
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 2.0e-61 239.2 131 89.3
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.4e-61 238.4 127 89.8
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 7.6e-61 237.3 131 90.1
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.3e-60 236.5 126 91.3
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.3e-60 236.5 126 91.3
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 1.3e-60 236.5 126 90.5
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.7e-60 236.1 127 89.8
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 2.2e-60 235.7 131 86.3
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 3.8e-60 235.0 131 87.8
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 3.8e-60 235.0 126 90.5
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 6.4e-60 234.2 131 87.0
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 6.4e-60 234.2 125 92.0
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 8.4e-60 233.8 125 91.2
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 8.4e-60 233.8 131 86.3
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 1.1e-59 233.4 126 89.7
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 1.1e-59 233.4 126 89.7
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 1.1e-59 233.4 128 88.3
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 1.1e-59 233.4 126 90.5
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 1.1e-59 233.4 126 90.5
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 1.4e-59 233.0 126 88.9
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 1.9e-59 232.6 124 90.3
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 1.9e-59 232.6 131 87.0
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.9e-59 232.6 127 89.8
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.4e-59 232.3 131 87.8
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 2.4e-59 232.3 131 87.8
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 4.2e-59 231.5 131 86.3
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 9.3e-59 230.3 125 88.8
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 9.3e-59 230.3 131 85.5
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 1.2e-58 229.9 126 89.7
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.2e-58 229.9 131 87.0
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 1.6e-58 229.6 124 89.5
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 3.5e-58 228.4 133 85.7
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 6.0e-58 227.6 131 84.7
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 7.9e-58 227.3 133 85.0
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.0e-57 226.9 126 87.3
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.0e-57 226.9 125 87.2
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 1.3e-57 226.5 125 87.2
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 1.8e-57 226.1 124 87.1
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 1.8e-57 226.1 126 86.5
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 2.3e-57 225.7 126 86.5
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 2.3e-57 225.7 126 86.5
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.3e-57 225.7 152 75.7
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 2.3e-57 225.7 131 84.7
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 2.3e-57 225.7 131 84.0
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 3.0e-57 225.3 130 83.1
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 3.0e-57 225.3 121 90.1
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 3.9e-57 224.9 131 82.4
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 3.9e-57 224.9 131 82.4
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 3.9e-57 224.9 130 83.8
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 6.7e-57 224.2 131 84.0
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 8.7e-57 223.8 131 81.7
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 8.7e-57 223.8 131 84.0
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 8.7e-57 223.8 131 84.0
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 8.7e-57 223.8 131 84.0
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 1.9e-56 222.6 131 84.0
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 1.9e-56 222.6 125 84.8
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 3.3e-56 221.9 131 83.2
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 4.3e-56 221.5 135 80.7
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 5.6e-56 221.1 131 83.2
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 7.4e-56 220.7 123 86.2
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 9.6e-56 220.3 131 80.9
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 9.6e-56 220.3 131 83.2
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 1.3e-55 219.9 132 83.3
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 1.6e-55 219.5 131 81.7
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 1.6e-55 219.5 131 81.7
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 1.6e-55 219.5 131 81.7
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 3.7e-55 218.4 131 80.9
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 8.1e-55 217.2 130 82.3
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 8.1e-55 217.2 126 84.9
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 1.5e-53 213.0 128 81.2
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 4.5e-53 211.5 123 82.1
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.7e-52 209.5 131 77.1
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 4.9e-52 208.0 120 83.3
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 6.4e-52 207.6 163 68.1
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.9e-51 206.1 163 67.5
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 1.9e-51 206.1 131 76.3
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 3.2e-51 205.3 133 74.4
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 4.2e-51 204.9 179 62.6
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 9.3e-51 203.8 131 74.8
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 3.9e-49 198.4 131 74.8
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 3.9e-49 198.4 131 77.9
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 9.6e-48 193.7 131 70.2
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 2.1e-47 192.6 195 53.8
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 2.1e-47 192.6 126 79.4
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 1.5e-45 186.4 128 68.0
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.5e-45 184.9 127 75.6
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 1.3e-44 183.3 126 64.3
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 6.5e-44 181.0 127 63.8
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.1e-43 180.3 128 67.2
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 4.2e-43 178.3 97 85.6
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 8.7e-41 170.6 127 62.2
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 3.3e-40 168.7 123 66.7
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 7.4e-40 167.5 121 72.7
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 1.1e-38 163.7 93 87.1
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 2.4e-38 162.5 139 64.7
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 6.9e-38 161.0 86 91.9
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.4e-37 158.7 97 79.4
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.9e-36 155.6 85 89.4
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 1.9e-35 152.9 86 87.2
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 1.6e-34 149.8 90 81.1
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 3.6e-34 148.7 90 80.0
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 3.6e-34 148.7 90 80.0
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 6.1e-34 147.9 86 83.7
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.0e-33 147.1 92 77.2
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.8e-33 146.4 74 90.5
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.9e-33 145.2 90 78.9
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 2.5e-32 142.5 105 71.4
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 5.7e-32 141.4 131 61.8
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.7e-31 139.8 75 84.0
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.1e-30 135.2 75 82.7
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 6.9e-30 134.4 85 80.0
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 1.1e-27 127.1 66 87.9
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.2e-27 125.2 70 81.4
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.6e-26 122.1 84 75.0
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.9e-25 118.6 63 84.1
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 7.4e-24 114.4 65 78.5
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.3e-20 103.6 91 57.1
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.3e-20 103.6 91 60.4
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 5.2e-17 91.7 81 54.3
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 1.4e-14 83.6 56 76.8
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 9.1e-14 80.9 41 85.4
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 5.9e-13 78.2 41 82.9
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 3.6e-10 68.9 41 75.6
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 6.7e-09 64.7 47 68.1
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 1.8e-06 56.6 37 73.0


User provided reference genes

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