Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 9.5e-118 428.7 481 100.0
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 1.3e-98 365.2 207 92.3
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 7.1e-97 359.4 207 93.2
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 9.3e-97 359.0 205 90.7
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 6.0e-96 356.3 207 90.8
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 6.0e-96 356.3 207 91.3
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 7.8e-96 355.9 207 90.3
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 3.0e-95 354.0 206 89.3
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 5.1e-95 353.2 207 89.4
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 5.1e-95 353.2 207 89.4
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 3.3e-94 350.5 207 88.9
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 3.3e-94 350.5 207 88.4
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 4.3e-94 350.1 207 89.4
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 4.3e-94 350.1 207 89.9
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 7.3e-94 349.4 207 88.4
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 9.6e-94 349.0 207 89.4
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 2.1e-93 347.8 207 88.4
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 4.8e-93 346.7 207 89.4
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 6.2e-93 346.3 208 88.5
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 1.1e-92 345.5 207 88.4
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 3.1e-92 344.0 205 88.3
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 4.0e-92 343.6 216 86.6
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 5.3e-92 343.2 207 87.0
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 5.3e-92 343.2 207 87.9
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 6.9e-92 342.8 207 87.9
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 9.0e-92 342.4 207 86.0
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 1.2e-91 342.0 207 87.9
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.2e-91 342.0 208 87.0
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 1.5e-91 341.7 207 87.9
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 1.5e-91 341.7 206 86.4
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 2.0e-91 341.3 206 86.4
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 2.0e-91 341.3 207 85.5
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 2.6e-91 340.9 208 87.5
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 2.6e-91 340.9 203 88.7
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 3.4e-91 340.5 207 86.0
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 3.4e-91 340.5 207 86.5
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 5.8e-91 339.7 207 86.5
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 5.8e-91 339.7 206 85.4
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 7.6e-91 339.3 207 86.0
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 7.6e-91 339.3 207 86.0
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 7.6e-91 339.3 207 88.4
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 7.6e-91 339.3 215 85.6
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 9.9e-91 339.0 207 85.5
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 9.9e-91 339.0 207 85.5
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 9.9e-91 339.0 207 87.0
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.3e-90 338.6 207 85.5
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.3e-90 338.6 207 85.5
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 1.3e-90 338.6 207 85.0
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 1.7e-90 338.2 207 85.5
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.2e-90 337.8 207 85.5
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 2.9e-90 337.4 207 84.5
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 3.8e-90 337.0 207 85.0
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 4.9e-90 336.7 206 85.0
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 6.4e-90 336.3 203 87.2
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 6.4e-90 336.3 203 87.2
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 6.4e-90 336.3 205 84.9
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 8.4e-90 335.9 210 84.8
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 8.4e-90 335.9 207 83.6
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.9e-89 334.7 207 84.5
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 3.2e-89 334.0 208 84.6
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 4.2e-89 333.6 207 83.1
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 4.2e-89 333.6 207 84.1
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 4.2e-89 333.6 209 87.1
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 9.3e-89 332.4 204 85.8
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 1.6e-88 331.6 206 84.0
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 1.6e-88 331.6 207 86.0
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 2.1e-88 331.3 208 84.1
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 2.1e-88 331.3 207 83.6
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 2.1e-88 331.3 198 89.4
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 2.7e-88 330.9 207 84.5
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 1.0e-87 328.9 207 83.6
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 1.8e-87 328.2 208 83.7
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 1.8e-87 328.2 208 83.7
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 1.8e-87 328.2 208 85.6
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 2.3e-87 327.8 207 83.6
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 6.7e-87 326.2 206 81.6
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 1.1e-86 325.5 204 83.3
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 3.3e-86 323.9 206 81.1
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 4.3e-86 323.6 208 82.7
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 7.4e-86 322.8 207 81.2
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 9.6e-86 322.4 196 87.2
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 4.8e-85 320.1 195 84.6
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 5.3e-84 316.6 246 73.2
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 9.0e-84 315.8 202 82.7
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 3.4e-83 313.9 207 80.2
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 5.8e-83 313.2 207 79.7
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 9.3e-81 305.8 207 76.3
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 6.7e-79 299.7 187 85.0
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 8.7e-79 299.3 204 77.0
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.5e-78 298.5 207 73.4
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 2.5e-78 297.7 208 75.5
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 2.8e-77 294.3 176 88.6
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 8.4e-74 282.7 176 84.7
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 2.5e-73 281.2 207 69.6
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 3.2e-73 280.8 176 83.0
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 1.6e-72 278.5 176 83.0
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 3.0e-71 274.2 225 69.8
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.5e-70 271.9 187 74.9
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 1.8e-68 265.0 196 69.4
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 4.5e-67 260.4 201 67.2
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 6.5e-66 256.5 196 71.4
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 1.4e-65 255.4 192 67.7
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 3.3e-62 244.2 188 71.8
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 2.2e-61 241.5 151 86.1
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 6.9e-60 236.5 171 75.4
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 1.4e-57 228.8 174 73.6
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 2.4e-52 211.5 188 62.2
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 7.0e-44 183.3 156 60.9
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 1.3e-34 152.5 94 83.0
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 2.7e-32 144.8 115 60.9
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 8.3e-29 133.3 103 74.8
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 5.4e-28 130.6 187 42.2
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 6.6e-26 123.6 79 77.2
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 1.9e-25 122.1 82 81.7
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 4.0e-23 114.4 76 75.0
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 5.2e-23 114.0 203 36.5
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 2.9e-21 108.2 64 85.9
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 1.8e-20 105.5 63 81.0
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 2.4e-20 105.1 63 82.5
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.9e-17 95.5 53 84.9
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.9e-17 95.5 107 50.5
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 3.6e-16 91.3 56 80.4
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 4.0e-15 87.8 61 73.8
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 8.9e-15 86.7 180 35.0
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 1.7e-13 82.4 137 35.0
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 1.7e-13 82.4 137 35.0
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 2.9e-13 81.6 63 68.3
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 8.3e-13 80.1 168 34.5
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 3.2e-12 78.2 52 73.1
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 8.6e-10 70.1 159 34.0
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 1.5e-06 59.3 34 82.4
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 3.4e-06 58.2 39 71.8
QL04p035096 Quercus lobata HOM05D005846 ORTHO05D007369 3.4e-06 58.2 31 83.9
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 4.4e-06 57.8 53 58.5


User provided reference genes

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