Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G132102 Manihot esculenta HOM05D000454 ORTHO05D002637 3.8e-38 161.0 81 100.0
Manes.04G132202 Manihot esculenta HOM05D000454 ORTHO05D002637 2.0e-31 138.7 78 93.6
Prupe.3G062200 Prunus persica HOM05D000454 ORTHO05D002637 1.2e-20 102.8 75 60.0
Prupe.3G061800 Prunus persica HOM05D000454 ORTHO05D002637 4.7e-20 100.9 79 55.7
TWI12G0592 Tripterygium wilfordii HOM05D000454 ORTHO05D002637 1.5e-18 95.9 79 54.4
FAN14G2323 Fragaria x ananassa HOM05D000454 ORTHO05D002637 2.6e-18 95.1 79 53.2
FvH4_6g32122 Fragaria vesca HOM05D000454 ORTHO05D002637 4.4e-18 94.4 79 53.2
CiPaw.01G233300 Carya illinoinensis HOM05D000454 ORTHO05D002637 1.3e-17 92.8 73 53.4
CiPaw.02G147100 Carya illinoinensis HOM05D000454 ORTHO05D002637 1.3e-17 92.8 77 57.1
Prupe.3G061900 Prunus persica HOM05D000454 ORTHO05D002637 1.3e-17 92.8 71 59.2
QL05p020685 Quercus lobata HOM05D000454 ORTHO05D002637 1.3e-17 92.8 76 57.9
GSVIVG01017031001 Vitis vinifera HOM05D000454 ORTHO05D002637 1.3e-17 92.8 78 57.7
QL05p020666 Quercus lobata HOM05D000454 ORTHO05D002637 3.7e-17 91.3 76 56.6
Sed0002239 Sechium edule HOM05D000454 ORTHO05D002637 6.4e-17 90.5 80 50.0
MD17G1186800 Malus domestica HOM05D000454 ORTHO05D002637 1.4e-16 89.4 71 57.7
RcHm_v2.0_Chr2g0139991 Rosa chinensis HOM05D000454 ORTHO05D002637 2.4e-16 88.6 79 51.9
Sed0022178 Sechium edule HOM05D000454 ORTHO05D002637 3.2e-16 88.2 77 46.8
Ciclev10027021m.g Citrus clementina HOM05D000454 ORTHO05D002637 4.1e-16 87.8 76 50.0
Cfa012703 Carpinus fangiana HOM05D000454 ORTHO05D002637 7.0e-16 87.0 73 50.7
Haze_07930 Corylus avellana HOM05D000454 ORTHO05D002637 7.0e-16 87.0 73 50.7
Medtr2g101310 Medicago truncatula HOM05D000454 ORTHO05D002637 9.2e-16 86.7 79 53.2
QL05p020655 Quercus lobata HOM05D000454 ORTHO05D002637 9.2e-16 86.7 75 54.7
QL05p020689 Quercus lobata HOM05D000454 ORTHO05D002637 9.2e-16 86.7 73 53.4
QL05p020802 Quercus lobata HOM05D000454 ORTHO05D002637 9.2e-16 86.7 73 56.2
Prupe.3G062400 Prunus persica HOM05D000454 ORTHO05D002637 1.2e-15 86.3 73 52.1
Lj3g0015079 Lotus japonicus HOM05D000454 ORTHO05D002637 1.6e-15 85.9 79 50.6
MBI04_g02616_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 2.0e-15 85.5 74 52.7
RcHm_v2.0_Chr2g0139911 Rosa chinensis HOM05D000454 ORTHO05D002637 2.0e-15 85.5 71 53.5
TAR383G0435 Trochodendron aralioides HOM05D000454 ORTHO05D002637 2.0e-15 85.5 76 51.3
COL.COLO4_30481 Corchorus olitorius HOM05D000454 ORTHO05D002637 2.7e-15 85.1 79 49.4
FvH4_6g32091 Fragaria vesca HOM05D000454 ORTHO05D002637 2.7e-15 85.1 73 53.4
FAN09G2279 Fragaria x ananassa HOM05D000454 ORTHO05D002637 2.7e-15 85.1 71 53.5
FAN14G5147 Fragaria x ananassa HOM05D000454 ORTHO05D002637 2.7e-15 85.1 73 53.4
MD17G1187000 Malus domestica HOM05D000454 ORTHO05D002637 3.5e-15 84.7 76 53.9
QL05p020771 Quercus lobata HOM05D000454 ORTHO05D002637 3.5e-15 84.7 73 50.7
FAN05G3697 Fragaria x ananassa HOM05D000454 ORTHO05D002637 4.6e-15 84.3 73 53.4
arahy.Tifrunner.gnm1.ann1.VK618R Arachis hypogaea HOM05D000454 ORTHO05D002637 6.0e-15 84.0 71 52.1
Haze_07928 Corylus avellana HOM05D000454 ORTHO05D002637 6.0e-15 84.0 73 52.1
Nn3g18151 Nelumbo nucifera HOM05D000454 ORTHO05D002637 7.8e-15 83.6 78 50.0
CiPaw.01G233200 Carya illinoinensis HOM05D000454 ORTHO05D002637 1.0e-14 83.2 73 53.4
Glyma.15G018600 Glycine max HOM05D000454 ORTHO05D002637 1.0e-14 83.2 71 53.5
Thecc.06G097100 Theobroma cacao HOM05D000454 ORTHO05D002637 1.0e-14 83.2 76 52.6
Medtr2g101320 Medicago truncatula HOM05D000454 ORTHO05D002637 1.3e-14 82.8 73 53.4
Prupe.3G062300 Prunus persica HOM05D000454 ORTHO05D002637 1.3e-14 82.8 76 52.6
arahy.Tifrunner.gnm1.ann1.2M4JN6 Arachis hypogaea HOM05D000454 ORTHO05D002637 1.7e-14 82.4 71 50.7
CiPaw.01G233400 Carya illinoinensis HOM05D000454 ORTHO05D002637 1.7e-14 82.4 79 48.1
Cfa012706 Carpinus fangiana HOM05D000454 ORTHO05D002637 2.3e-14 82.0 72 50.0
Phvul.005G167300 Phaseolus vulgaris HOM05D000454 ORTHO05D002637 2.3e-14 82.0 73 52.1
Potri.001G187600 Populus trichocarpa HOM05D000454 ORTHO05D002637 2.3e-14 82.0 74 50.0
PGR102G3036 Punica granatum HOM05D000454 ORTHO05D002637 2.3e-14 82.0 72 48.6
FvH4_6g32121 Fragaria vesca HOM05D000454 ORTHO05D002637 3.0e-14 81.6 71 50.7
FAN14G0896 Fragaria x ananassa HOM05D000454 ORTHO05D002637 3.0e-14 81.6 71 50.7
Prupe.3G065300 Prunus persica HOM05D000454 ORTHO05D002637 3.0e-14 81.6 76 52.6
RcHm_v2.0_Chr2g0139761 Rosa chinensis HOM05D000454 ORTHO05D002637 3.0e-14 81.6 76 50.0
QL05p020680 Quercus lobata HOM05D000454 ORTHO05D002637 3.9e-14 81.3 73 47.9
CANSAT56G0237 Cannabis sativa HOM05D000454 ORTHO05D002637 5.0e-14 80.9 71 50.7
Ciclev10025077m.g Citrus clementina HOM05D000454 ORTHO05D002637 5.0e-14 80.9 79 50.6
COL.COLO4_30483 Corchorus olitorius HOM05D000454 ORTHO05D002637 5.0e-14 80.9 79 43.0
Dinv37996 Davidia involucrata HOM05D000454 ORTHO05D002637 5.0e-14 80.9 75 52.0
Hma1.2p1_0659F.1_g197390 Hydrangea macrophylla HOM05D000454 ORTHO05D002637 5.0e-14 80.9 72 52.8
FvH4_6g32100 Fragaria vesca HOM05D000454 ORTHO05D002637 8.6e-14 80.1 70 54.3
FAN14G0706 Fragaria x ananassa HOM05D000454 ORTHO05D002637 8.6e-14 80.1 70 54.3
Atru.chr7.2100 Acer truncatum HOM05D000454 ORTHO05D002637 1.1e-13 79.7 75 44.0
Atru.chr7.2112 Acer truncatum HOM05D000454 ORTHO05D002637 1.1e-13 79.7 75 44.0
CsaV3_3G023710 Cucumis sativus L. HOM05D000454 ORTHO05D002637 1.1e-13 79.7 75 46.7
Haze_15818 Corylus avellana HOM05D000454 ORTHO05D002637 1.5e-13 79.3 73 50.7
FvH4_6g32123 Fragaria vesca HOM05D000454 ORTHO05D002637 1.5e-13 79.3 74 50.0
arahy.Tifrunner.gnm1.ann1.3J38IA Arachis hypogaea HOM05D000454 ORTHO05D002637 1.9e-13 79.0 71 47.9
Aqoxy7G01501 Aquilegia oxysepala HOM05D000454 ORTHO05D002637 2.5e-13 78.6 76 46.1
QL05p020728 Quercus lobata HOM05D000454 ORTHO05D002637 2.5e-13 78.6 79 54.4
QL93p0247_0007 Quercus lobata HOM05D000454 ORTHO05D002637 2.5e-13 78.6 79 54.4
ClCG07G013260 Citrullus lanatus HOM05D000454 ORTHO05D002637 3.3e-13 78.2 78 44.9
COL.COLO4_30480 Corchorus olitorius HOM05D000454 ORTHO05D002637 4.3e-13 77.8 79 44.3
Sed0028147 Sechium edule HOM05D000454 ORTHO05D002637 4.3e-13 77.8 73 41.1
DCAR_007717 Daucus carota HOM05D000454 ORTHO05D002637 5.6e-13 77.4 79 41.8
RcHm_v2.0_Chr1g0353591 Rosa chinensis HOM05D000454 ORTHO05D002637 5.6e-13 77.4 71 53.5
FAN05G3019 Fragaria x ananassa HOM05D000454 ORTHO05D002637 9.5e-13 76.6 70 48.6
Actinidia39143 Actinidia chinensis HOM05D000454 ORTHO05D002637 1.2e-12 76.3 76 48.7
BcaB06g27937 Brassica carinata HOM05D000454 ORTHO05D002637 1.2e-12 76.3 68 48.5
Cfa003673 Carpinus fangiana HOM05D000454 ORTHO05D002637 1.6e-12 75.9 73 50.7
Atru.chr7.2113 Acer truncatum HOM05D000454 ORTHO05D002637 2.8e-12 75.1 74 41.9
Duzib168G0801 Durio zibethinus HOM05D000454 ORTHO05D002637 2.8e-12 75.1 75 46.7
Lj8A587G30 Lonicera japonica HOM05D000454 ORTHO05D002637 2.8e-12 75.1 79 40.5
CARHR010460 Cardamine hirsuta HOM05D000454 ORTHO05D002637 3.6e-12 74.7 68 47.1
Lj8C577G4 Lonicera japonica HOM05D000454 ORTHO05D002637 3.6e-12 74.7 79 40.5
Lj8C577G8 Lonicera japonica HOM05D000454 ORTHO05D002637 3.6e-12 74.7 79 40.5
Lj8C586G6 Lonicera japonica HOM05D000454 ORTHO05D002637 3.6e-12 74.7 79 40.5
RcHm_v2.0_Chr2g0140001 Rosa chinensis HOM05D000454 ORTHO05D002637 3.6e-12 74.7 81 46.9
Thecc.09G043600 Theobroma cacao HOM05D000454 ORTHO05D002637 3.6e-12 74.7 75 46.7
Carub.0001s0976 Capsella rubella HOM05D000454 ORTHO05D002637 6.2e-12 73.9 68 44.1
TPR.G759 Trifolium pratense HOM05D000454 ORTHO05D002637 6.2e-12 73.9 75 46.7
BcaC02g08539 Brassica carinata HOM05D000454 ORTHO05D002637 1.1e-11 73.2 68 42.6
C04p53190 Brassica napus HOM05D000454 ORTHO05D002637 1.1e-11 73.2 68 42.6
BolC4t26875H Brassica oleracea HOM05D000454 ORTHO05D002637 1.1e-11 73.2 68 42.6
RcHm_v2.0_Chr2g0139771 Rosa chinensis HOM05D000454 ORTHO05D002637 1.1e-11 73.2 71 50.7
RcHm_v2.0_Chr2g0139851 Rosa chinensis HOM05D000454 ORTHO05D002637 1.4e-11 72.8 71 50.7
Thecc.06G096900 Theobroma cacao HOM05D000454 ORTHO05D002637 1.4e-11 72.8 76 43.4
ATR0315G145 Amborella trichopoda HOM05D000454 ORTHO05D002637 2.3e-11 72.0 72 44.4
AL4G15180 Arabidopsis lyrata HOM05D000454 ORTHO05D002637 2.3e-11 72.0 68 44.1
BcaNung05231 Brassica carinata HOM05D000454 ORTHO05D002637 2.3e-11 72.0 66 45.5
Thhalv10007236m.g Eutrema salsugineum HOM05D000454 ORTHO05D002637 2.3e-11 72.0 80 41.2
AT1G10340 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 3.1e-11 71.6 68 41.2
A04p18170 Brassica napus HOM05D000454 ORTHO05D002637 3.1e-11 71.6 68 47.1
Dinv14254 Davidia involucrata HOM05D000454 ORTHO05D002637 3.1e-11 71.6 80 45.0
AL1G21080 Arabidopsis lyrata HOM05D000454 ORTHO05D002637 4.0e-11 71.2 68 42.6
CSS0003218 Camellia sinensis var. sinensis HOM05D000454 ORTHO05D002637 4.0e-11 71.2 77 45.5
Potri.018G042200 Populus trichocarpa HOM05D000454 ORTHO05D002637 4.0e-11 71.2 81 39.5
BcaNung05166 Brassica carinata HOM05D000904 ORTHO05D006931 5.2e-11 70.9 66 43.9
C08p13580 Brassica napus HOM05D000904 ORTHO05D006931 5.2e-11 70.9 66 43.9
BolC8t48998H Brassica oleracea HOM05D000904 ORTHO05D005281 5.2e-11 70.9 66 43.9
BraA08t35316Z Brassica rapa HOM05D000904 ORTHO05D005281 5.2e-11 70.9 66 43.9
Cpa.g.sc7.266 Carica papaya HOM05D000454 ORTHO05D002637 5.2e-11 70.9 77 41.6
TWI34G0381 Tripterygium wilfordii HOM05D000454 ORTHO05D002637 5.2e-11 70.9 77 44.2
C08p13600 Brassica napus HOM05D000454 ORTHO05D002637 6.8e-11 70.5 68 38.2
Carub.0001s4235 Capsella rubella HOM05D000454 ORTHO05D002637 8.9e-11 70.1 68 44.1
Ciclev10007796m.g Citrus clementina HOM05D000454 ORTHO05D002637 8.9e-11 70.1 75 42.7
ECA248G1005 Erigeron canadensis HOM05D000454 ORTHO05D002637 8.9e-11 70.1 79 39.2
PSO782G3005 Papaver somniferum HOM05D000454 ORTHO05D002637 1.2e-10 69.7 76 43.4
Sabra18G0042900 Salix brachista HOM05D000454 ORTHO05D002637 1.2e-10 69.7 78 39.7
THA.LOC104799197 Tarenaya hassleriana HOM05D000454 ORTHO05D002637 1.2e-10 69.7 72 41.7
A08p34030 Brassica napus HOM05D000904 ORTHO05D006931 1.5e-10 69.3 66 42.4
Nn3g18158 Nelumbo nucifera HOM05D000454 ORTHO05D002637 1.5e-10 69.3 80 46.2
MBI04_g02615_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 2.6e-10 68.6 69 44.9
Sopen08g020730 Solanum pennellii HOM05D000454 ORTHO05D002637 3.4e-10 68.2 73 43.8
C08p13640 Brassica napus HOM05D000454 ORTHO05D002637 4.4e-10 67.8 66 43.9
BolC8t49002H Brassica oleracea HOM05D000454 ORTHO05D002637 4.4e-10 67.8 66 43.9
MBI18_g43125_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 4.4e-10 67.8 74 45.9
PSO566G0187 Papaver somniferum HOM05D000454 ORTHO05D002637 4.4e-10 67.8 76 42.1
Hma1.2p1_1056F.1_g252690 Hydrangea macrophylla HOM05D000454 ORTHO05D002637 5.8e-10 67.4 65 47.7
AT2G24600 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 7.5e-10 67.0 68 42.6
arahy.Tifrunner.gnm1.ann1.CL84N0 Arachis hypogaea HOM05D000454 ORTHO05D002637 7.5e-10 67.0 77 42.9
CARHR268010 Cardamine hirsuta HOM05D000454 ORTHO05D002637 7.5e-10 67.0 71 49.3
Solyc08g066770.3 Solanum lycopersicum HOM05D000454 ORTHO05D002637 7.5e-10 67.0 73 43.8
Oeu031552.2 Olea europaea HOM05D000454 ORTHO05D002637 9.9e-10 66.6 79 39.2
Sopen08g020740 Solanum pennellii HOM05D000454 ORTHO05D002637 9.9e-10 66.6 73 43.8
PGSC0003DMG400012067 Solanum tuberosum HOM05D000454 ORTHO05D002637 9.9e-10 66.6 73 43.8
Thhalv10015398m.g Eutrema salsugineum HOM05D000454 ORTHO05D002637 3.7e-09 64.7 68 50.0
Lj8A605G12 Lonicera japonica HOM05D000454 ORTHO05D002637 3.7e-09 64.7 75 38.7
Manes.04G132001 Manihot esculenta HOM05D000454 ORTHO05D002637 3.7e-09 64.7 72 41.7
Nitab4.5_0000151g0410 Nicotiana tabacum HOM05D000454 ORTHO05D002637 3.7e-09 64.7 76 40.8
SalBow4G0286 Salvia bowleyana HOM05D000454 ORTHO05D002637 3.7e-09 64.7 79 39.2
Peaxi162Scf00161g00126 Petunia axillaris HOM05D000454 ORTHO05D002637 4.9e-09 64.3 76 39.5
HanXRQChr09g0275901 Helianthus annuus HOM05D000454 ORTHO05D002637 6.4e-09 63.9 80 40.0
Nitab4.5_0000837g0120 Nicotiana tabacum HOM05D000454 ORTHO05D002637 8.3e-09 63.5 76 40.8
AL1G48550 Arabidopsis lyrata HOM05D000454 ORTHO05D002637 1.4e-08 62.8 67 43.3
Sp2g30100 Schrenkiella parvula HOM05D000454 ORTHO05D002637 1.4e-08 62.8 66 42.4
BcaNung05167 Brassica carinata HOM05D000454 ORTHO05D002637 1.9e-08 62.4 69 36.2
MELO3C024269.2 Cucumis melo HOM05D000454 ORTHO05D002637 1.9e-08 62.4 76 42.1
HanXRQChr09g0275911 Helianthus annuus HOM05D000454 ORTHO05D002637 1.9e-08 62.4 76 39.5
Lsat_1_v5_gn_4_101061 Lactuca sativa HOM05D000454 ORTHO05D002637 1.9e-08 62.4 77 41.6
Manes.11G035400 Manihot esculenta HOM05D000454 ORTHO05D002637 2.4e-08 62.0 73 49.3
Lsat_1_v5_gn_1_47140 Lactuca sativa HOM05D000454 ORTHO05D002637 3.2e-08 61.6 79 36.7
Manes.11G035500 Manihot esculenta HOM05D000454 ORTHO05D002637 3.2e-08 61.6 73 49.3
VMungo1080G0542 Vigna mungo HOM05D000454 ORTHO05D002637 3.2e-08 61.6 53 50.9
Oeu012195.1 Olea europaea HOM05D000454 ORTHO05D002637 4.1e-08 61.2 79 36.7
PGSC0003DMG400004315 Solanum tuberosum HOM05D000454 ORTHO05D002637 4.1e-08 61.2 73 42.5
AT5G54710 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 9.2e-08 60.1 66 39.4
COL.COLO4_18654 Corchorus olitorius HOM05D000454 ORTHO05D002637 1.6e-07 59.3 66 43.9
Manes.16G072800 Manihot esculenta HOM05D000454 ORTHO05D002637 1.6e-07 59.3 81 33.3
Carub.0005s0574 Capsella rubella HOM05D000454 ORTHO05D002637 2.7e-07 58.5 71 42.3
CARHR180050 Cardamine hirsuta HOM05D000454 ORTHO05D002637 2.7e-07 58.5 73 45.2
CsaV3_7G033580 Cucumis sativus L. HOM05D000454 ORTHO05D002637 2.7e-07 58.5 76 39.5
AT1G34050 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 4.6e-07 57.8 67 35.8
ClCG09G001750 Citrullus lanatus HOM05D000454 ORTHO05D002637 6.0e-07 57.4 68 41.2
AT5G54700 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 7.8e-07 57.0 71 40.8
HanXRQChr11g0352041 Helianthus annuus HOM05D000454 ORTHO05D002637 1.3e-06 56.2 66 39.4
BcaC01g06320 Brassica carinata HOM05D000454 ORTHO05D002637 1.7e-06 55.8 71 43.7
Carub.0001s3214 Capsella rubella HOM05D000454 ORTHO05D002637 1.7e-06 55.8 67 38.8
AT5G50140 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 2.3e-06 55.5 71 39.4
BcaC01g06321 Brassica carinata HOM05D000454 ORTHO05D002637 2.3e-06 55.5 71 43.7
C03p16880 Brassica napus HOM05D000454 ORTHO05D002637 2.3e-06 55.5 71 43.7
RcHm_v2.0_Chr2g0140021 Rosa chinensis HOM05D000454 ORTHO05D002637 3.0e-06 55.1 60 41.7
Dinv30454 Davidia involucrata HOM05D000454 ORTHO05D002637 6.6e-06 53.9 55 45.5
Lsat_1_v5_gn_4_99840 Lactuca sativa HOM05D000454 ORTHO05D002637 6.6e-06 53.9 69 46.4
A03p14460 Brassica napus HOM05D000454 ORTHO05D002637 8.6e-06 53.5 71 42.3
BolC3t14102H Brassica oleracea HOM05D000454 ORTHO05D002637 8.6e-06 53.5 71 42.3
GSVIVG01035671001 Vitis vinifera HOM05D000454 ORTHO05D002637 8.6e-06 53.5 78 37.2


User provided reference genes

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