Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 0.0e+00 1372.8 709 100.0
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 0.0e+00 1113.6 728 80.5
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 1.0e-280 969.9 712 71.5
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 1.3e-275 953.0 710 70.6
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 5.0e-275 951.0 713 70.7
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 3.3e-266 921.8 710 68.6
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 6.1e-265 917.5 712 69.2
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 3.7e-262 908.3 710 68.9
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 8.3e-262 907.1 712 68.0
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 3.5e-260 901.7 714 68.3
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.8e-259 898.3 714 67.5
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.5e-258 895.6 712 66.3
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 4.3e-258 894.8 727 66.9
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.3e-258 894.8 714 68.1
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 1.0e-256 890.2 699 69.0
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.0e-256 888.3 713 67.7
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 6.8e-256 887.5 699 67.7
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 6.8e-256 887.5 711 66.1
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 9.8e-255 883.6 714 68.2
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 1.7e-254 882.9 713 65.5
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 2.2e-254 882.5 710 65.9
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 6.4e-254 880.9 718 67.1
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.4e-253 879.8 708 66.9
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 3.0e-251 872.1 711 65.1
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 5.0e-251 871.3 736 65.2
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 6.6e-251 870.9 730 64.2
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 1.9e-250 869.4 713 64.5
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.5e-250 869.0 709 65.7
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 4.3e-250 868.2 711 66.5
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 9.5e-250 867.1 711 65.1
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 4.7e-249 864.8 706 67.4
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 1.2e-247 860.1 712 63.9
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 2.6e-247 859.0 703 65.1
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.7e-246 856.3 711 64.4
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 3.7e-246 855.1 711 65.7
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 3.7e-246 855.1 719 64.1
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 8.3e-246 854.0 720 64.6
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.2e-244 850.1 709 64.7
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 1.6e-244 849.7 697 66.4
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 2.7e-244 849.0 708 64.7
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 3.5e-244 848.6 710 64.2
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 1.5e-242 843.2 709 63.8
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 1.9e-242 842.8 712 63.5
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 1.6e-241 839.7 711 64.1
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 8.9e-240 833.9 711 62.6
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 3.4e-239 832.0 710 63.2
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 1.7e-238 829.7 716 62.7
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 2.9e-238 828.9 710 63.1
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 3.2e-237 825.5 714 63.9
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 3.0e-235 818.9 724 61.3
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 8.6e-235 817.4 722 62.3
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.9e-234 816.2 714 63.2
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 9.5e-234 813.9 710 62.5
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 2.1e-233 812.8 716 61.9
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 2.8e-233 812.4 711 61.9
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 2.0e-231 806.2 722 61.2
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 2.9e-230 802.4 714 61.3
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 1.0e-227 793.9 712 60.3
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 3.0e-227 792.3 716 61.7
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 3.3e-226 788.9 713 61.7
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 7.3e-226 787.7 715 60.8
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 2.8e-225 785.8 710 61.1
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 4.0e-224 781.9 728 60.2
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 5.3e-224 781.6 700 61.6
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 1.5e-223 780.0 726 59.8
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 3.4e-223 778.9 713 60.7
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 2.2e-222 776.2 713 60.7
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 9.3e-221 770.8 713 58.8
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.3e-219 766.9 711 59.8
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 3.3e-218 762.3 715 59.7
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 7.3e-218 761.1 709 58.3
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 9.6e-218 760.8 716 58.8
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 9.6e-218 760.8 709 59.4
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 1.3e-217 760.4 717 60.4
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 2.8e-217 759.2 714 58.8
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 4.8e-217 758.4 715 58.3
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 8.1e-217 757.7 714 60.4
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 3.1e-216 755.7 716 59.6
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 3.1e-216 755.7 712 59.4
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 5.3e-216 755.0 714 58.0
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 6.9e-216 754.6 716 59.1
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 9.0e-216 754.2 721 59.2
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 1.5e-215 753.4 718 58.9
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 1.5e-215 753.4 718 58.9
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 2.6e-215 752.7 715 58.7
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 3.4e-215 752.3 709 58.4
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 4.5e-215 751.9 708 57.8
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 5.8e-215 751.5 714 58.4
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 9.9e-215 750.7 718 58.6
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 8.4e-214 747.7 718 58.6
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 8.4e-214 747.7 719 60.5
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 3.2e-213 745.7 712 58.1
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 5.4e-213 745.0 716 58.2
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 2.7e-212 742.7 713 58.8
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 4.6e-212 741.9 712 59.1
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 1.8e-211 740.0 717 58.2
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 3.0e-211 739.2 720 57.9
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 3.8e-206 722.2 721 56.4
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 9.3e-205 717.6 712 56.7
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 7.9e-204 714.5 714 56.2
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 2.3e-203 713.0 718 56.8
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 3.1e-200 702.6 729 56.7
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 2.9e-198 696.0 705 57.7
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 2.1e-196 689.9 867 47.9
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 5.1e-195 685.3 723 55.7
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 1.9e-194 683.3 710 53.8
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 1.6e-193 680.2 710 53.8
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 5.0e-190 668.7 713 55.7
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 6.5e-190 668.3 726 53.3
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 3.6e-188 662.5 699 53.9
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 4.6e-188 662.1 720 53.9
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 3.0e-187 659.4 712 53.2
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 1.7e-185 653.7 720 52.1
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 3.4e-183 646.0 742 52.0
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 5.9e-183 645.2 647 56.9
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 1.2e-180 637.5 723 52.3
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 3.2e-173 612.8 715 50.8
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 9.4e-173 611.3 719 50.3
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 3.9e-171 605.9 720 52.9
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 9.7e-170 601.3 701 51.5
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 5.5e-165 585.5 720 50.8
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 1.2e-164 584.3 720 50.8
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 5.9e-159 565.5 608 52.3
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 4.1e-152 542.7 386 74.1
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 4.5e-151 539.3 738 47.6
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 3.8e-150 536.2 697 49.2
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 9.8e-146 521.5 736 45.2
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.0e-143 513.8 371 73.6
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 1.1e-136 491.5 394 65.0
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 7.8e-135 485.3 554 53.1
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 4.3e-133 479.6 375 67.5
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 4.3e-133 479.6 375 67.5
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 2.7e-127 460.3 318 75.8
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 1.2e-122 444.9 321 73.2
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 7.8e-119 432.2 393 58.0
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 2.0e-106 391.0 495 48.3
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 9.6e-101 372.1 394 52.8
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 7.6e-98 362.5 753 37.2
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 8.7e-94 349.0 744 36.3
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 1.9e-93 347.8 798 35.0
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.5e-93 347.4 632 38.8
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 3.7e-92 343.6 720 35.8
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 1.5e-74 285.0 339 47.8
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.8e-70 271.6 349 47.3
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 1.4e-67 261.9 342 48.8
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.3e-65 255.4 411 43.6
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 8.8e-62 242.7 476 36.1
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.6e-55 221.9 150 77.3
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 2.3e-54 218.0 443 34.5
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 2.0e-50 204.9 260 44.2
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 7.2e-40 169.9 290 39.3
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 6.8e-38 163.3 181 53.0
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 6.8e-38 163.3 152 52.6
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 1.6e-34 152.1 164 52.4
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 8.3e-28 129.8 379 28.2
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.7e-26 124.8 69 89.9
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 1.3e-25 122.5 367 28.3
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 8.6e-25 119.8 69 85.5
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 8.0e-23 113.2 156 42.9
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.9e-19 102.1 80 56.2
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.4e-19 101.7 57 89.5
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.4e-19 101.7 62 79.0
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 1.3e-17 95.9 51 92.2
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 6.6e-17 93.6 499 25.1
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 1.5e-16 92.4 51 88.2
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 6.2e-15 87.0 95 52.6
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 2.6e-13 81.6 56 71.4
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.9e-11 75.5 95 49.5
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 2.4e-11 75.1 90 50.0
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 3.0e-09 68.2 417 25.7
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.2e-07 62.8 59 52.5
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 2.1e-07 62.0 339 22.1


User provided reference genes

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