Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 2185.6 1129 100.0
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1704.9 1150 78.7
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1703.7 1126 79.3
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1653.3 1153 75.9
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1652.9 1155 75.8
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1627.5 1151 74.9
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1625.9 1152 75.1
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1619.4 1135 75.9
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1617.1 1163 74.3
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1615.9 1170 73.8
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1612.0 1141 75.4
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1601.3 1171 73.5
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1598.2 1136 75.6
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1595.1 1133 74.4
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1594.3 1172 73.0
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1589.3 1142 74.6
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1585.9 1151 74.9
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1576.6 1164 73.1
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1573.5 1135 74.4
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1573.1 1140 74.3
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1573.1 1183 71.8
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1572.4 1135 74.4
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1569.3 1156 72.1
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1568.1 1159 73.1
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1568.1 1183 72.0
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1566.6 1159 73.1
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1563.5 1136 73.0
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1556.6 1138 72.8
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1534.6 1153 70.7
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1532.7 1164 70.6
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1532.7 1148 71.3
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1531.5 1145 71.7
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1527.3 1163 71.8
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1526.9 1151 71.3
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1525.8 1156 70.4
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1523.1 1143 72.4
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1523.1 1157 71.0
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1520.4 1160 71.3
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1513.0 1155 71.3
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1503.4 1155 70.8
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1503.4 1155 70.8
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1500.7 1156 70.7
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1500.0 1179 70.1
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1499.2 1135 70.9
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1493.8 1130 70.8
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1493.4 1170 69.8
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1490.3 1132 70.9
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1488.8 1139 70.1
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1484.5 1152 70.7
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1483.8 1137 70.1
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1483.0 1136 70.6
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1481.1 1149 69.3
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1476.5 1148 69.0
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1471.8 1149 69.6
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1467.6 1126 70.8
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1466.8 1174 67.9
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1465.7 1135 69.9
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1462.6 1136 69.3
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1451.4 1135 69.3
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1449.9 1139 68.7
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1444.9 1195 66.9
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1444.5 1156 68.3
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1441.0 1135 68.5
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1437.9 1135 68.2
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1437.6 1146 68.0
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1435.6 1148 67.9
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1434.1 1153 67.4
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1430.2 1155 67.4
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1427.5 1130 68.0
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1427.2 1112 68.7
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1426.4 1154 67.1
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1425.2 1154 67.1
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1422.9 1156 67.0
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1421.0 1156 66.9
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1416.4 1157 66.8
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1416.0 1157 66.6
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1415.6 1140 66.6
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1414.1 1159 67.2
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1405.6 1141 67.0
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1399.4 1150 66.8
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1391.3 1160 65.6
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1388.6 1132 67.1
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1378.2 1157 65.8
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1333.2 1155 64.8
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1330.9 1167 64.0
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1328.5 1207 61.1
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1279.6 890 76.5
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1277.7 942 73.5
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1186.8 910 71.4
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1157.9 1028 62.8
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1132.5 1234 52.7
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 0.0e+00 1105.1 1211 52.3
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 0.0e+00 1100.1 1213 52.4
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 0.0e+00 1092.4 735 76.1
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.0e-293 1013.8 1138 52.0
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.7e-277 959.9 740 69.5
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 9.5e-260 901.0 1400 41.6
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 4.0e-250 869.0 589 77.4
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 4.7e-243 845.5 590 75.6
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 2.7e-230 803.1 545 76.7
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 2.3e-229 800.0 538 77.7
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 3.9e-229 799.3 620 69.8
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 6.0e-222 775.4 537 76.5
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 5.3e-202 709.1 620 62.7
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 1.4e-194 684.5 592 63.9
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 7.2e-183 645.6 1165 39.6
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 9.4e-183 645.2 557 63.4
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 4.8e-171 606.3 547 61.4
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 5.9e-161 572.8 543 59.1
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 3.0e-149 533.9 462 64.9
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.6e-142 511.5 389 68.1
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 1.6e-137 495.0 549 53.4
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 5.0e-136 490.0 331 76.4
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.7e-131 474.9 331 75.2
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 3.4e-116 424.1 472 53.8
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.7e-112 411.8 358 65.9
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 8.6e-112 409.5 1169 29.9
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 4.2e-106 390.6 539 46.8
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 9.2e-106 389.4 380 59.2
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.9e-95 355.1 358 54.5
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 4.3e-95 354.0 248 75.8
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 4.9e-91 340.5 1179 28.8
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 3.2e-82 311.2 424 49.1
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 4.2e-82 310.8 253 60.1
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 7.1e-74 283.5 250 63.2
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 4.6e-73 280.8 185 75.7
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 6.3e-70 270.4 221 65.6
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 2.9e-67 261.5 360 46.1
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.9e-67 261.5 193 70.5
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 2.5e-66 258.5 149 89.3
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 7.2e-66 256.9 147 86.4
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 9.4e-66 256.5 357 45.7
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 2.3e-64 251.9 357 45.1
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 3.0e-64 251.5 357 44.8
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 6.9e-61 240.4 196 63.3
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.5e-50 206.1 106 97.2
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 4.2e-50 204.5 113 90.3
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 1.0e-48 199.9 111 90.1
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 2.3e-48 198.7 113 88.5
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 4.4e-47 194.5 113 86.7
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 5.7e-47 194.1 113 86.7
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 2.6e-44 185.3 109 87.2
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.9e-43 181.8 586 29.7
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 1.6e-41 176.0 106 85.8
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 1.2e-39 169.9 177 59.3
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 2.0e-39 169.1 99 86.9
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.2e-38 165.6 89 93.3
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 3.7e-38 164.9 97 84.5
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 1.9e-34 152.5 82 93.9
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.4e-29 136.3 120 59.2
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 7.0e-29 134.0 165 53.3
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.2e-25 123.2 180 41.1
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 2.6e-23 115.5 72 80.6
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 1.8e-21 109.4 75 74.7
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 1.8e-21 109.4 73 72.6
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 5.4e-21 107.8 75 73.3
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 3.5e-20 105.1 97 61.9
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 1.5e-18 99.8 103 52.4


User provided reference genes

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