Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.0e-96 356.7 173 100.0
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 1.0e-64 250.4 175 68.6
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.3e-64 249.2 176 68.2
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.8e-61 239.6 175 64.0
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 1.7e-59 233.0 176 64.8
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 4.9e-59 231.5 176 68.2
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.5e-58 229.2 196 58.7
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 7.1e-58 227.6 177 66.1
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 1.6e-57 226.5 196 58.2
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 6.0e-57 224.6 170 62.4
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 1.0e-56 223.8 177 64.4
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 1.0e-56 223.8 177 64.4
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.0e-56 223.8 176 62.5
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 3.0e-56 222.2 175 62.3
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 3.0e-56 222.2 181 61.3
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 3.9e-56 221.9 175 61.7
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.9e-56 221.9 175 61.7
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.7e-56 220.7 175 61.1
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 8.7e-56 220.7 176 63.6
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 1.1e-55 220.3 186 57.0
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.5e-55 219.9 174 59.2
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.9e-55 219.5 186 57.0
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.5e-55 219.2 180 61.1
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 3.3e-55 218.8 177 63.8
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.3e-55 218.4 173 60.7
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 4.3e-55 218.4 176 60.8
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.6e-54 216.5 177 59.9
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 2.1e-54 216.1 175 60.6
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.1e-54 216.1 175 60.6
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 2.1e-54 216.1 186 57.0
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 3.7e-54 215.3 203 51.7
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 4.8e-54 214.9 196 56.1
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 6.2e-54 214.5 179 60.9
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 6.2e-54 214.5 177 62.1
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.8e-53 213.0 174 59.8
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 2.4e-53 212.6 203 51.7
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 6.9e-53 211.1 175 58.3
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.5e-52 209.9 173 58.4
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 1.7e-51 206.5 181 56.9
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.7e-51 206.5 174 58.0
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 6.5e-51 204.5 175 55.4
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 8.4e-51 204.1 172 57.0
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.9e-50 203.0 179 55.3
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 3.5e-49 198.7 176 56.2
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.3e-48 196.8 177 53.1
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 1.8e-48 196.4 176 57.4
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 3.9e-48 195.3 199 50.8
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 3.9e-48 195.3 178 55.1
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 4.3e-47 191.8 174 54.0
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 9.7e-47 190.7 175 53.7
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 9.7e-47 190.7 175 53.7
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 9.7e-47 190.7 172 53.5
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 3.7e-46 188.7 172 54.1
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 4.8e-46 188.3 172 55.2
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 8.2e-46 187.6 174 53.4
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.2e-46 187.6 122 67.2
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 8.2e-46 187.6 174 53.4
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.1e-45 187.2 172 55.2
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 1.1e-45 187.2 169 54.4
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 2.4e-45 186.0 174 54.0
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 2.4e-45 186.0 172 54.1
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 4.1e-45 185.3 172 55.8
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 6.9e-45 184.5 174 53.4
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.9e-45 184.5 174 51.7
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 9.0e-45 184.1 174 52.3
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 1.5e-44 183.3 169 54.4
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 1.5e-44 183.3 174 54.0
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 1.5e-44 183.3 136 61.8
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 2.0e-44 183.0 167 52.1
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 2.6e-44 182.6 161 54.0
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 4.5e-44 181.8 174 52.9
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 5.9e-44 181.4 158 56.3
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 5.9e-44 181.4 174 51.7
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 1.0e-43 180.6 167 51.5
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 2.9e-43 179.1 167 52.1
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 1.1e-42 177.2 173 52.0
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 1.1e-42 177.2 130 63.8
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 1.9e-42 176.4 158 55.1
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 1.9e-42 176.4 158 55.1
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 1.9e-42 176.4 158 55.1
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 1.9e-42 176.4 158 55.1
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.5e-42 176.0 177 50.3
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.5e-42 176.0 177 50.3
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 4.2e-42 175.3 158 55.1
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 4.2e-42 175.3 158 55.1
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 4.2e-42 175.3 113 67.3
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 7.2e-42 174.5 157 55.4
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 9.4e-42 174.1 157 54.8
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 1.6e-41 173.3 157 54.8
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 3.6e-41 172.2 118 61.9
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 4.6e-41 171.8 142 56.3
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 4.6e-41 171.8 114 64.0
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 4.6e-41 171.8 174 50.0
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 7.9e-41 171.0 174 50.0
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 1.0e-40 170.6 135 57.8
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 1.8e-40 169.9 161 55.3
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 2.3e-40 169.5 160 55.6
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 2.3e-40 169.5 160 55.6
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 2.3e-40 169.5 160 55.6
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 2.3e-40 169.5 161 55.3
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 2.3e-40 169.5 157 54.1
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 3.9e-40 168.7 114 64.0
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 5.1e-40 168.3 121 62.0
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.1e-39 167.2 156 53.8
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.1e-39 167.2 168 50.6
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 2.5e-39 166.0 174 47.7
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 2.5e-39 166.0 197 45.7
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 5.7e-39 164.9 160 53.8
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 7.4e-39 164.5 176 47.2
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 9.7e-39 164.1 158 51.9
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 4.8e-38 161.8 119 58.8
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 4.8e-38 161.8 166 50.6
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 1.1e-37 160.6 171 47.4
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 1.1e-37 160.6 119 58.8
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 1.4e-37 160.2 141 56.0
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.8e-37 159.8 176 47.2
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.1e-37 158.7 114 61.4
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 9.1e-37 157.5 131 52.7
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.2e-36 157.1 123 59.3
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 1.5e-36 156.8 158 53.2
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 2.0e-36 156.4 131 54.2
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.0e-36 156.4 114 61.4
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.6e-36 156.0 120 58.3
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 3.4e-36 155.6 168 50.0
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 5.9e-36 154.8 174 44.8
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 7.7e-36 154.5 164 45.1
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 1.3e-35 153.7 120 57.5
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 1.7e-35 153.3 119 58.0
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.9e-34 149.8 165 44.8
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.2e-34 149.1 114 55.3
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 9.4e-34 147.5 166 44.6
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.0e-32 144.1 188 41.5
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 1.1e-31 140.6 175 40.6
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.0e-31 139.8 114 57.9
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.2e-30 136.3 109 53.2
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 3.7e-30 135.6 114 54.4
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 6.3e-30 134.8 117 53.0
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 3.5e-28 129.0 124 50.8
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.5e-28 128.6 103 53.4
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 5.9e-28 128.3 123 45.5
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 3.8e-27 125.6 171 38.0
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 6.5e-27 124.8 124 48.4
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 1.1e-26 124.0 120 47.5
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 4.2e-26 122.1 126 47.6
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 5.5e-26 121.7 147 41.5
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 7.2e-26 121.3 95 57.9
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 8.0e-25 117.9 107 48.6
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.8e-24 116.7 96 56.2
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 8.8e-24 114.4 93 55.9
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 4.4e-23 112.1 111 45.9
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 4.8e-22 108.6 110 50.9
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 1.1e-21 107.5 118 45.8
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.4e-21 107.1 84 54.8
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 1.8e-21 106.7 109 50.5
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 1.6e-20 103.6 114 45.6
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 3.8e-19 99.0 114 43.0
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 6.5e-19 98.2 121 43.8
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 1.5e-18 97.1 128 40.6
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 1.9e-18 96.7 144 38.9
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 3.2e-18 95.9 107 43.9
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.6e-17 93.6 73 57.5
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 1.6e-17 93.6 112 41.1
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 3.0e-16 89.4 128 36.7
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.8e-16 88.2 74 52.7
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 3.4e-15 85.9 66 56.1
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 5.7e-15 85.1 60 61.7
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.8e-13 80.1 68 51.5
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 2.2e-11 73.2 179 30.7
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 3.2e-10 69.3 101 38.6
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 8.8e-08 61.2 41 61.0
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 9.8e-07 57.8 55 50.9


User provided reference genes

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