Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 0.0e+00 2091.2 1047 100.0
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 0.0e+00 1288.5 1011 67.7
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.5e-291 1005.7 1093 53.7
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.5e-283 979.9 1078 52.8
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 1.0e-279 967.2 1084 52.0
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 1.6e-253 880.2 1067 48.3
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 2.0e-251 873.2 1104 48.0
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 3.0e-244 849.4 1112 47.2
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 1.1e-241 840.9 1108 46.8
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 7.2e-230 801.6 1106 46.0
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 7.2e-230 801.6 1040 47.6
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 3.4e-227 792.7 1077 46.2
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 4.1e-225 785.8 1110 45.0
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 5.4e-225 785.4 1092 45.1
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 1.6e-224 783.9 1092 45.5
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.9e-222 776.9 1150 43.3
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.4e-220 770.8 1169 42.5
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 4.4e-219 765.8 1106 43.4
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 7.0e-217 758.4 1092 44.4
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 2.3e-215 753.4 1091 44.3
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 4.0e-212 742.7 1091 43.2
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 9.2e-209 731.5 1091 42.9
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 2.1e-205 720.3 1079 43.2
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 8.9e-204 714.9 1101 43.2
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 1.1e-201 708.0 1077 42.6
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.2e-201 706.4 889 47.5
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 2.9e-186 656.8 1107 40.7
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 4.3e-182 642.9 1107 39.5
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 3.6e-181 639.8 1106 39.8
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 9.0e-180 635.2 1076 39.9
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.2e-179 634.8 1103 39.4
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 1.5e-179 634.4 1089 40.7
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 6.4e-178 629.0 1116 38.6
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 5.3e-172 609.4 1101 38.1
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 6.4e-170 602.4 1122 38.2
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 1.2e-168 598.2 1091 37.9
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 2.3e-167 594.0 1088 37.7
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 3.1e-164 583.6 1077 37.3
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 5.8e-163 579.3 1064 36.3
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 4.9e-162 576.2 1090 37.9
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 1.8e-159 567.8 1075 37.0
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 5.1e-159 566.2 1088 35.9
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 8.2e-157 558.9 1185 35.7
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 2.0e-155 554.3 1087 37.4
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 5.0e-154 549.7 1115 37.2
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 2.7e-152 543.9 1072 36.9
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 4.6e-152 543.1 1055 39.0
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 3.0e-151 540.4 1051 36.7
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 6.7e-151 539.3 1057 37.7
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 3.3e-150 537.0 1195 35.2
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 4.3e-150 536.6 1050 35.6
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.2e-149 534.3 1055 37.9
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 2.0e-147 527.7 1074 36.5
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 3.8e-146 523.5 1093 36.6
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 6.5e-146 522.7 1073 35.8
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 6.5e-146 522.7 1078 35.3
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 7.9e-144 515.8 1181 34.6
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 8.2e-141 505.8 1069 36.3
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 5.3e-140 503.1 1072 35.2
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 2.0e-139 501.1 1130 33.6
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 5.9e-139 499.6 1055 35.4
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 6.5e-138 496.1 1131 33.6
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 2.5e-137 494.2 1096 33.9
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 5.5e-137 493.0 1066 34.7
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 3.9e-135 486.9 1047 34.7
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 1.1e-134 485.3 1186 33.1
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 5.7e-134 483.0 834 39.4
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 5.7e-134 483.0 1098 34.2
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 3.7e-133 480.3 586 49.7
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 3.2e-129 467.2 1070 34.2
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 2.0e-126 458.0 1052 32.9
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.6e-123 448.4 1055 33.9
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.3e-117 428.7 1082 32.7
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 4.8e-117 426.8 926 34.7
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.4e-116 425.2 1048 32.2
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 4.1e-116 423.7 1099 33.1
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 6.1e-112 409.8 1080 32.2
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 2.6e-102 377.9 1057 31.2
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 4.9e-101 373.6 1046 31.8
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 2.4e-100 371.3 696 38.1
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 3.2e-100 370.9 1050 32.8
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 2.3e-98 364.8 777 35.4
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 5.4e-92 343.6 1035 31.6
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 6.0e-91 340.1 1047 29.6
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 2.1e-88 331.6 1029 30.6
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 3.6e-88 330.9 419 45.6
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 2.3e-87 328.2 1029 30.7
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 3.7e-85 320.9 953 31.0
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 2.7e-83 314.7 1131 27.1
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 7.8e-83 313.2 803 32.9
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 7.8e-83 313.2 808 32.7
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 2.3e-82 311.6 808 32.7
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 9.6e-81 306.2 710 33.7
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 8.1e-80 303.1 729 32.6
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 6.6e-74 283.5 941 29.4
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 1.1e-65 256.1 252 55.2
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.8e-64 251.5 526 35.4
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 4.8e-64 250.8 784 29.8
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 4.2e-60 237.7 768 29.9
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.0e-58 233.0 417 39.3
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.3e-57 228.0 333 40.2
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 1.6e-56 225.7 479 34.4
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 3.7e-56 224.6 752 30.1
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.5e-54 219.2 1019 27.2
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 7.6e-54 216.9 631 31.4
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 2.9e-53 214.9 759 30.3
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 3.8e-53 214.5 539 33.2
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.8e-50 205.7 492 33.3
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 3.0e-50 204.9 766 28.6
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 3.9e-50 204.5 1065 25.5
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 4.8e-48 197.6 585 30.6
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.4e-47 196.1 750 28.8
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 4.5e-46 191.0 305 36.7
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 6.5e-45 187.2 739 28.0
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 6.1e-43 180.6 332 35.8
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 1.8e-42 179.1 161 57.1
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 6.3e-40 170.6 166 54.2
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.2e-38 166.4 162 56.8
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 1.0e-37 163.3 139 56.8
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 3.8e-37 161.4 134 59.7
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 7.2e-36 157.1 133 57.1
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.2e-35 156.4 739 26.8
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 1.2e-35 156.4 145 57.2
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.8e-34 152.5 160 50.0
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 1.7e-32 146.0 768 24.0
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 2.4e-31 142.1 167 48.5
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 4.1e-31 141.4 165 48.5
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 1.3e-29 136.3 129 55.0
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 2.9e-29 135.2 158 46.2
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 3.8e-29 134.8 1020 23.6
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 5.5e-28 131.0 514 27.8
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 3.6e-27 128.3 342 30.4
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 1.4e-26 126.3 303 30.4
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 8.8e-26 123.6 369 29.8
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 4.4e-25 121.3 754 23.9
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 2.4e-23 115.5 765 24.1
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 2.6e-22 112.1 281 33.1
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 4.2e-20 104.8 70 65.7
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 7.2e-20 104.0 436 28.2
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 2.1e-19 102.4 456 27.4
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 9.7e-17 93.6 482 27.4
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 4.1e-15 88.2 80 55.0
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 3.8e-13 81.6 226 32.7
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 6.1e-11 74.3 211 33.6
SMO205G0005 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 7.0e-07 60.8 74 37.8


User provided reference genes

Program Settings