Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 0.0e+00 1166.4 869 100.0
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 3.9e-221 772.3 717 72.9
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 1.3e-213 747.3 651 72.5
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 5.3e-210 735.3 714 67.6
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 5.5e-207 725.3 696 69.7
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 6.1e-206 721.8 609 74.1
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 7.9e-206 721.5 672 73.1
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 1.6e-203 713.8 674 69.4
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 1.1e-202 711.1 735 66.0
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.5e-201 707.2 671 67.5
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 1.3e-200 704.1 567 75.7
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 1.1e-199 701.0 677 68.4
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 7.2e-199 698.4 581 75.0
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 2.7e-198 696.4 615 72.5
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 1.4e-197 694.1 667 67.8
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 6.7e-197 691.8 616 72.1
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 1.1e-196 691.0 754 63.0
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 4.3e-196 689.1 723 64.0
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 1.3e-195 687.6 639 69.0
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 2.8e-195 686.4 733 59.9
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 2.4e-194 683.3 755 62.5
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 9.1e-194 681.4 581 73.0
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.2e-193 681.0 659 68.1
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.0e-193 680.2 759 62.8
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 2.6e-193 679.9 726 65.8
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 8.5e-192 674.9 588 75.0
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 1.1e-191 674.5 663 72.4
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 2.1e-190 670.2 566 69.6
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 2.1e-190 670.2 735 67.8
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 2.1e-190 670.2 588 72.6
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 3.6e-190 669.5 668 66.3
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 7.9e-190 668.3 735 67.2
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 7.9e-190 668.3 735 67.3
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.4e-189 667.5 735 67.5
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 2.3e-189 666.8 627 68.1
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 3.3e-188 662.9 665 64.8
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 7.4e-188 661.8 603 66.8
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 1.3e-187 661.0 671 66.3
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 1.3e-187 661.0 695 67.6
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 2.2e-187 660.2 675 62.5
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 2.2e-187 660.2 664 66.9
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.7e-187 659.4 599 74.1
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 2.4e-186 656.8 664 63.6
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 4.1e-186 656.0 652 66.0
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 7.0e-186 655.2 594 69.2
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.3e-184 651.0 645 66.8
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 2.9e-184 649.8 683 62.8
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 8.5e-184 648.3 751 63.2
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 1.1e-183 647.9 590 66.6
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 7.2e-183 645.2 698 63.6
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 6.1e-182 642.1 697 62.8
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 2.3e-181 640.2 606 68.5
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 5.2e-181 639.0 667 64.2
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 5.2e-181 639.0 689 65.5
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 3.3e-180 636.3 673 66.7
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 1.4e-178 630.9 695 68.2
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 1.8e-178 630.6 694 57.9
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.4e-178 630.2 688 64.8
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 3.1e-178 629.8 695 68.2
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 7.0e-178 628.6 663 64.3
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.0e-176 624.8 657 62.4
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 1.9e-175 620.5 748 60.7
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 3.6e-174 616.3 612 66.2
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.5e-172 610.9 686 63.8
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 2.6e-172 610.1 674 63.6
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 4.4e-172 609.4 599 68.6
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 4.4e-172 609.4 652 68.3
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 7.5e-172 608.6 617 64.5
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 2.8e-171 606.7 732 57.4
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 1.4e-170 604.4 521 67.8
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 7.0e-170 602.1 551 66.6
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 9.1e-170 601.7 521 67.6
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 1.6e-169 600.9 627 60.8
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 5.9e-169 599.0 557 65.5
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 3.8e-168 596.3 487 72.3
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 5.0e-168 595.9 585 65.5
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 5.0e-168 595.9 585 65.5
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 1.5e-167 594.3 585 65.3
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 7.2e-167 592.0 523 67.7
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 1.2e-166 591.3 730 59.6
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 2.1e-166 590.5 595 65.5
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 3.0e-165 586.6 665 58.6
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 1.1e-162 578.2 615 61.3
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.1e-162 578.2 694 60.1
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 1.2e-161 574.7 695 61.9
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 2.7e-161 573.5 604 63.4
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 3.5e-161 573.2 601 63.9
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 4.5e-161 572.8 677 58.5
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 1.7e-160 570.9 602 61.1
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 3.8e-160 569.7 620 57.6
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 7.2e-159 565.5 696 57.9
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 9.5e-159 565.1 595 64.9
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 1.6e-158 564.3 674 58.5
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 8.0e-158 562.0 665 59.7
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 5.7e-156 555.8 603 59.4
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 3.5e-153 546.6 512 63.5
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 1.5e-151 541.2 659 60.1
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 5.2e-149 532.7 669 56.8
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 6.8e-149 532.3 613 60.2
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 1.5e-148 531.2 613 60.2
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 2.1e-134 484.2 479 68.1
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 9.3e-122 442.2 494 64.6
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 4.9e-115 419.9 500 52.8
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 1.7e-112 411.4 512 55.5
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 1.8e-109 401.4 330 66.4
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 1.8e-109 401.4 499 51.9
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 6.9e-109 399.4 306 70.9
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.7e-91 341.7 232 76.3
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 6.5e-83 313.2 532 41.9
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 3.6e-81 307.4 507 45.2
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 3.7e-78 297.4 452 48.5
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 5.5e-74 283.5 288 64.6
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 2.7e-73 281.2 331 66.2
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 2.2e-70 271.6 484 42.6
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 6.3e-70 270.0 360 63.9
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 2.6e-68 264.6 484 41.7
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 6.5e-67 260.0 281 66.9
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 1.1e-66 259.2 175 76.0
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 2.7e-65 254.6 275 64.0
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 1.8e-61 241.9 203 70.0
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 1.8e-61 241.9 305 49.5
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 4.1e-61 240.7 176 73.3
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 1.1e-24 119.8 263 41.8
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 9.8e-23 113.2 144 55.6
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 9.8e-23 113.2 88 63.6
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 7.1e-21 107.1 298 34.2
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 3.0e-19 101.7 58 82.8
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 4.7e-17 94.4 69 68.1
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 3.1e-16 91.7 97 55.7
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 3.4e-15 88.2 86 64.0
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 2.9e-14 85.1 97 54.6
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 4.9e-14 84.3 95 57.9
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 1.9e-13 82.4 81 74.1
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 7.8e-12 77.0 421 25.2
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 1.7e-11 75.9 89 53.9
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 3.0e-11 75.1 450 26.4
arahy.Tifrunner.gnm1.ann1.6LH71N Arachis hypogaea HOM05D005307 ORTHO05D006695 8.1e-09 67.0 139 65.5
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 2.4e-08 65.5 217 38.2
AagrBONN_evm.TU.Sc2ySwM_344.2987 Anthoceros agrestis HOM05D005307 ORTHO05D006695 4.0e-08 64.7 102 52.9
Mapoly0001s0473 Marchantia polymorpha HOM05D042108 ORTHO05D048733 4.4e-07 61.2 165 57.0
Migut.M00654 Erythranthe guttata HOM05D001023 ORTHO05D000912 1.7e-06 59.3 85 38.8
CARHR043940 Cardamine hirsuta HOM05D001023 ORTHO05D000912 4.9e-06 57.8 85 37.6


User provided reference genes

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