Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G104800 Manihot esculenta HOM05D006724 ORTHO05D008514 1.4e-198 696.0 333 100.0
Potri.011G141300 Populus trichocarpa HOM05D006724 ORTHO05D008514 2.4e-126 456.1 293 73.7
Sabra11G0126900 Salix brachista HOM05D006724 ORTHO05D008514 5.1e-121 438.3 324 65.4
Cfa020617 Carpinus fangiana HOM05D006724 ORTHO05D008514 2.2e-111 406.4 305 64.9
QL08p023685 Quercus lobata HOM05D006724 ORTHO05D008514 3.7e-111 405.6 312 63.5
CANSAT35G1416 Cannabis sativa HOM05D006724 ORTHO05D008514 6.9e-110 401.4 269 69.5
Prupe.4G173900 Prunus persica HOM05D006724 ORTHO05D008514 1.5e-109 400.2 300 65.0
CiPaw.11G166800 Carya illinoinensis HOM05D006724 ORTHO05D008514 2.6e-109 399.4 270 69.3
MD11G1255900 Malus domestica HOM05D006724 ORTHO05D008514 2.9e-108 396.0 292 64.4
Thecc.07G098800 Theobroma cacao HOM05D006724 ORTHO05D008514 2.9e-108 396.0 278 68.7
Lj8C153G9 Lonicera japonica HOM05D006724 ORTHO05D008514 3.8e-108 395.6 304 62.8
Haze_09388 Corylus avellana HOM05D006724 ORTHO05D008514 5.0e-108 395.2 305 63.3
Dinv14945 Davidia involucrata HOM05D006724 ORTHO05D008514 8.5e-108 394.4 285 67.0
Actinidia18778 Actinidia chinensis HOM05D006724 ORTHO05D008514 3.2e-107 392.5 269 68.0
Hma1.2p1_0416F.1_g148420 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 2.1e-106 389.8 290 63.8
GSVIVG01014275001 Vitis vinifera HOM05D006724 ORTHO05D008514 2.7e-106 389.4 240 73.8
FvH4_3g19250 Fragaria vesca HOM05D006724 ORTHO05D008514 4.7e-106 388.7 257 69.3
FAN11G3114 Fragaria x ananassa HOM05D006724 ORTHO05D008514 4.7e-106 388.7 257 69.3
THA.LOC104818095 Tarenaya hassleriana HOM05D006724 ORTHO05D008514 6.1e-106 388.3 292 66.1
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 1.8e-105 386.7 251 72.9
Lj3g0025660 Lotus japonicus HOM05D006724 ORTHO05D008514 1.8e-105 386.7 284 66.2
RcHm_v2.0_Chr5g0032321 Rosa chinensis HOM05D006724 ORTHO05D008514 1.8e-105 386.7 285 64.6
ClCG11G017740 Citrullus lanatus HOM05D006724 ORTHO05D008514 5.1e-105 385.2 259 69.1
Eucgr.F01176 Eucalyptus grandis HOM05D006724 ORTHO05D008514 5.1e-105 385.2 243 72.0
Gorai.002G066900 Gossypium raimondii HOM05D006724 ORTHO05D008514 5.1e-105 385.2 274 65.7
A05p34310 Brassica napus HOM05D006724 ORTHO05D008514 8.8e-105 384.4 287 64.8
BraA05t22252Z Brassica rapa HOM05D006724 ORTHO05D008514 1.5e-104 383.6 265 68.7
Lalb_Chr01g0006641 Lupinus albus HOM05D006724 ORTHO05D008514 2.0e-104 383.3 271 67.9
C05p52090 Brassica napus HOM05D006724 ORTHO05D008514 2.6e-104 382.9 317 61.5
BcaB06g29538 Brassica carinata HOM05D006724 ORTHO05D008514 3.3e-104 382.5 265 68.3
Carub.0003s1479 Capsella rubella HOM05D006724 ORTHO05D008514 3.3e-104 382.5 244 71.7
arahy.Tifrunner.gnm1.ann1.WDE0T2 Arachis hypogaea HOM05D006724 ORTHO05D008514 9.7e-104 380.9 289 64.7
BolC5t33894H Brassica oleracea HOM05D006724 ORTHO05D008514 9.7e-104 380.9 317 61.2
Duzib213G0893 Durio zibethinus HOM05D006724 ORTHO05D008514 1.3e-103 380.6 266 69.2
Ah.04g164500 Amaranthus hybridus HOM05D006724 ORTHO05D008514 2.8e-103 379.4 316 58.9
arahy.Tifrunner.gnm1.ann1.N2BE0G Arachis hypogaea HOM05D006724 ORTHO05D008514 2.8e-103 379.4 281 66.2
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 4.8e-103 378.6 244 71.7
Psat4g169400 Pisum sativum HOM05D006724 ORTHO05D008514 8.2e-103 377.9 278 65.8
CARHR090120 Cardamine hirsuta HOM05D006724 ORTHO05D008514 1.4e-102 377.1 244 71.3
Rhsim04G0022800 Rhododendron simsii HOM05D006724 ORTHO05D008514 1.4e-102 377.1 277 64.3
Sp3g13350 Schrenkiella parvula HOM05D006724 ORTHO05D008514 1.8e-102 376.7 290 63.1
AT3G15140 Arabidopsis thaliana HOM05D006724 ORTHO05D008514 3.1e-102 375.9 246 69.5
AL3G27530 Arabidopsis lyrata HOM05D006724 ORTHO05D008514 4.1e-102 375.6 301 61.1
CsaV3_4G033360 Cucumis sativus L. HOM05D006724 ORTHO05D008514 1.2e-101 374.0 259 66.0
Ciclev10010824m.g Citrus clementina HOM05D006724 ORTHO05D008514 1.5e-101 373.6 286 64.3
TPR.G28169 Trifolium pratense HOM05D006724 ORTHO05D008514 1.5e-101 373.6 244 71.3
EL10Ac4g08255 Beta vulgaris HOM05D006724 ORTHO05D008514 2.0e-101 373.2 252 68.7
CSS0014927 Camellia sinensis var. sinensis HOM05D006724 ORTHO05D008514 2.0e-101 373.2 267 65.5
PSO832G3136 Papaver somniferum HOM05D006724 ORTHO05D008514 2.0e-101 373.2 249 67.1
Cc05_g11660 Coffea canephora HOM05D006724 ORTHO05D008514 2.6e-101 372.9 264 65.5
MELO3C025618.2 Cucumis melo HOM05D006724 ORTHO05D008514 2.6e-101 372.9 259 66.0
AUR62019487 Chenopodium quinoa HOM05D006724 ORTHO05D008514 3.5e-101 372.5 276 63.0
Sc03g0010250 Simmondsia chinensis HOM05D006724 ORTHO05D008514 3.5e-101 372.5 313 58.8
PGR083G0421 Punica granatum HOM05D006724 ORTHO05D008514 2.2e-100 369.8 277 62.8
FAN25G2812 Fragaria x ananassa HOM05D006724 ORTHO05D008514 5.0e-100 368.6 292 61.6
DCAR_017120 Daucus carota HOM05D006724 ORTHO05D008514 6.5e-100 368.2 251 66.9
Sed0012116 Sechium edule HOM05D006724 ORTHO05D008514 8.5e-100 367.9 259 66.8
FAN21G1177 Fragaria x ananassa HOM05D006724 ORTHO05D008514 1.9e-99 366.7 320 56.9
Medtr8g061030 Medicago truncatula HOM05D006724 ORTHO05D008514 1.9e-99 366.7 244 69.3
VMungo1127G0638 Vigna mungo HOM05D006724 ORTHO05D008514 3.2e-99 365.9 265 64.5
Glyma.06G234800 Glycine max HOM05D006724 ORTHO05D008514 2.7e-98 362.8 275 64.0
Phvul.011G156700 Phaseolus vulgaris HOM05D006724 ORTHO05D008514 1.0e-97 360.9 273 63.7
HPP92_003869 Vanilla planifolia HOM05D006724 ORTHO05D008514 8.8e-97 357.8 260 61.9
PGSC0003DMG400012400 Solanum tuberosum HOM05D006724 ORTHO05D008514 2.0e-96 356.7 296 57.8
Aqoxy4G00591 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 7.4e-96 354.8 244 65.2
SGA_v2.0_scaffold34G13794 Striga asiatica HOM05D006724 ORTHO05D008514 7.4e-96 354.8 298 58.7
Aqoxy4G00685 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 9.7e-96 354.4 244 65.2
Solyc07g062750.4 Solanum lycopersicum HOM05D006724 ORTHO05D008514 6.3e-95 351.7 244 64.8
Sopen07g030980 Solanum pennellii HOM05D006724 ORTHO05D008514 8.2e-95 351.3 294 57.8
HPP92_003898 Vanilla planifolia HOM05D006724 ORTHO05D008514 1.4e-94 350.5 257 60.3
CAN.G162.28 Capsicum annuum HOM05D006724 ORTHO05D008514 4.1e-94 349.0 244 63.9
TWI32G0858 Tripterygium wilfordii HOM05D006724 ORTHO05D008514 5.3e-94 348.6 274 62.8
MSTRG.15243 Avicennia marina HOM05D006724 ORTHO05D008514 9.1e-94 347.8 313 57.5
HanXRQChr12g0364011 Helianthus annuus HOM05D006724 ORTHO05D008514 4.5e-93 345.5 293 59.0
Atru.chr2.2388 Acer truncatum HOM05D006724 ORTHO05D008514 5.9e-93 345.1 229 72.1
Migut.M00774 Erythranthe guttata HOM05D006724 ORTHO05D008514 7.2e-91 338.2 285 58.2
Nitab4.5_0000246g0080 Nicotiana tabacum HOM05D006724 ORTHO05D008514 8.0e-90 334.7 335 50.4
Gohir.D01G047400 Gossypium hirsutum HOM05D006724 ORTHO05D008514 5.2e-89 332.0 274 59.5
unitig_85.g27410 Utricularia gibba HOM05D006724 ORTHO05D008514 5.7e-88 328.6 282 56.7
Lsat_1_v5_gn_9_98661 Lactuca sativa HOM05D006724 ORTHO05D008514 7.5e-88 328.2 249 63.1
SalBow8G1625 Salvia bowleyana HOM05D006724 ORTHO05D008514 7.5e-88 328.2 306 54.6
Zm00001eb281480 Zea mays HOM05D006724 ORTHO05D008514 9.7e-88 327.8 232 63.4
ECA240G0540 Erigeron canadensis HOM05D006724 ORTHO05D008514 3.7e-87 325.9 246 65.0
Nitab4.5_0000831g0090 Nicotiana tabacum HOM05D006724 ORTHO05D008514 1.6e-85 320.5 264 58.3
AagrBONN_evm.TU.Sc2ySwM_340.295 Anthoceros agrestis HOM05D006724 ORTHO05D008514 3.5e-85 319.3 244 60.2
vmacro09520 Vaccinium macrocarpon HOM05D006724 ORTHO05D008514 3.5e-85 319.3 284 56.3
Peaxi162Scf00069g01835 Petunia axillaris HOM05D006724 ORTHO05D008514 1.3e-84 317.4 234 63.2
AUR62036149 Chenopodium quinoa HOM05D006724 ORTHO05D008514 3.8e-84 315.8 209 67.9
Mapoly0005s0020 Marchantia polymorpha HOM05D006724 ORTHO05D008514 6.5e-84 315.1 247 59.9
DCAR_017097 Daucus carota HOM05D006724 ORTHO05D008514 8.8e-81 304.7 242 55.4
Pp3c27_5050 Physcomitrium patens HOM05D006724 ORTHO05D008514 9.8e-80 301.2 244 57.0
DCAR_013127 Daucus carota HOM05D006724 ORTHO05D008514 6.3e-79 298.5 278 51.1
Gohir.A01G060866 Gossypium hirsutum HOM05D006724 ORTHO05D008514 9.1e-78 294.7 192 69.8
CBR_g4826 Chara braunii HOM05D000829 ORTHO05D008514 1.2e-77 294.3 249 55.0
DCAR_013126 Daucus carota HOM05D006724 ORTHO05D008514 3.3e-75 286.2 230 57.4
SMO367G0863 Selaginella moellendorffii HOM05D006724 ORTHO05D008514 2.6e-72 276.6 249 54.2
Gohir.A01G060932 Gossypium hirsutum HOM05D006724 ORTHO05D008514 6.1e-66 255.4 247 51.8
Ca_07350_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 1.4e-65 254.2 223 56.5
FAN16G1823 Fragaria x ananassa HOM05D006724 ORTHO05D008514 3.7e-63 246.1 304 45.1
Hma1.2p1_0416F.1_g148440 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 1.1e-62 244.6 162 67.9
Nn1g04264 Nelumbo nucifera HOM05D006724 ORTHO05D008514 2.2e-55 220.3 137 71.5
CDE08G0827 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 7.3e-51 205.3 143 62.2
arahy.Tifrunner.gnm1.ann1.60K44K Arachis hypogaea HOM05D006724 ORTHO05D008514 5.2e-49 199.1 188 54.8
unitig_86.g29838 Utricularia gibba HOM05D006724 ORTHO05D008514 2.5e-43 180.3 142 60.6
ATR0602G031 Amborella trichopoda HOM05D006724 ORTHO05D008514 8.1e-42 175.3 133 62.4
Hund22832 Selenicereus undatus HOM05D006724 ORTHO05D008514 1.1e-41 174.9 149 59.1
Hma1.2p1_0416F.1_g148430 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 4.8e-34 149.4 85 77.6
Thhalv10021514m.g Eutrema salsugineum HOM05D006724 ORTHO05D008514 1.1e-33 148.3 289 35.6
arahy.Tifrunner.gnm1.ann1.E3N302 Arachis hypogaea HOM05D006724 ORTHO05D008514 3.1e-33 146.7 151 50.3
TAR627G0912 Trochodendron aralioides HOM05D006724 ORTHO05D008514 9.0e-33 145.2 131 55.7
Hund22831 Selenicereus undatus HOM05D006724 ORTHO05D008514 4.9e-31 139.4 96 64.6
Oeu019299.2 Olea europaea HOM05D006724 ORTHO05D008514 7.9e-29 132.1 83 68.7
Os06g0353400 Oryza sativa ssp. japonica HOM05D006724 ORTHO05D008514 1.5e-24 117.9 122 49.2
CBR_g41532 Chara braunii HOM05D005005 ORTHO05D006178 2.8e-18 97.1 205 27.8
Nn1g07335 Nelumbo nucifera HOM05D006724 ORTHO05D008514 2.8e-18 97.1 67 68.7
Eucgr.G03212 Eucalyptus grandis HOM05D005005 ORTHO05D006178 3.1e-17 93.6 211 29.4
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 9.0e-17 92.0 206 28.2
EL10Ac4g10102 Beta vulgaris HOM05D005005 ORTHO05D006178 7.6e-16 89.0 205 27.8
AUR62006554 Chenopodium quinoa HOM05D005005 ORTHO05D006178 1.7e-15 87.8 206 27.7
CDE02G0934 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 3.8e-15 86.7 62 62.9
Duzib128G0392 Durio zibethinus HOM05D005005 ORTHO05D006178 3.8e-15 86.7 205 26.8
AUR62000208 Chenopodium quinoa HOM05D005005 ORTHO05D006178 4.9e-15 86.3 206 27.7
SMO367G0260 Selaginella moellendorffii HOM05D005005 ORTHO05D006178 4.9e-15 86.3 214 23.8
Hund21969 Selenicereus undatus HOM05D005005 ORTHO05D006178 6.5e-15 85.9 206 27.2
PGR031G0380 Punica granatum HOM05D005005 ORTHO05D006178 8.4e-15 85.5 205 27.3
Cfa009893 Carpinus fangiana HOM05D005005 ORTHO05D006178 1.1e-14 85.1 205 27.3
unitig_86.g29839 Utricularia gibba HOM05D006724 ORTHO05D008514 4.2e-14 83.2 67 55.2
Atru.chr3.3001 Acer truncatum HOM05D005005 ORTHO05D006178 5.5e-14 82.8 219 26.5
Sc06g0004720 Simmondsia chinensis HOM05D005005 ORTHO05D006178 9.3e-14 82.0 205 25.9
Hma1.2p1_1796F.1_g302710 Hydrangea macrophylla HOM05D005005 ORTHO05D006178 1.2e-13 81.6 216 25.9
SGA_v2.0_scaffold232G43481 Striga asiatica HOM05D005005 ORTHO05D006178 3.5e-13 80.1 212 27.8
Os01g0618000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 6.0e-13 79.3 211 28.0
PRCOL_00004087 Prasinoderma coloniale HOM05D000406 ORTHO05D003425 3.9e-12 76.6 210 27.6
SEGI_32986 Sequoiadendron giganteum HOM05D005005 ORTHO05D006178 6.7e-12 75.9 215 25.6
Ciclev10027284m.g Citrus clementina HOM05D005005 ORTHO05D006178 1.1e-11 75.1 205 23.4
Ca_24305_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 9.0e-09 65.5 45 66.7
Cc04_g14120 Coffea canephora HOM05D006724 ORTHO05D008514 2.0e-08 64.3 44 65.9
SGA_v2.0_scaffold79G25606 Striga asiatica HOM05D006724 ORTHO05D008514 1.9e-06 57.8 42 50.0


User provided reference genes

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