Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G069500 Manihot esculenta HOM05D003481 ORTHO05D004001 1.6e-272 942.2 487 100.0
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 7.8e-211 737.3 480 79.8
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 3.0e-210 735.3 480 78.5
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 3.9e-210 734.9 481 79.4
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 6.6e-210 734.2 480 81.0
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 1.4e-207 726.5 481 77.5
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 2.0e-206 722.6 480 79.6
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 2.6e-206 722.2 481 77.8
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 2.6e-206 722.2 486 78.0
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 2.6e-206 722.2 478 79.1
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 3.4e-206 721.8 479 76.8
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 9.9e-206 720.3 481 78.8
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 9.9e-206 720.3 480 79.4
Prupe.6G356900 Prunus persica HOM05D003481 ORTHO05D004001 1.7e-205 719.5 481 77.1
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 3.7e-205 718.4 480 78.8
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 3.7e-205 718.4 479 79.1
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 2.4e-204 715.7 481 76.9
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 4.1e-204 714.9 481 78.2
Lj1A1155G48 Lonicera japonica HOM05D003481 ORTHO05D004001 2.1e-203 712.6 478 79.9
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 8.6e-202 707.2 481 78.8
TAR624G0033 Trochodendron aralioides HOM05D003481 ORTHO05D004001 8.6e-202 707.2 481 77.5
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 1.1e-201 706.8 481 76.9
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 1.9e-201 706.1 481 77.1
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 3.3e-201 705.3 481 79.0
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 7.3e-201 704.1 481 77.8
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 8.1e-200 700.7 481 76.9
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 1.1e-199 700.3 479 77.0
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 5.2e-199 698.0 480 77.5
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 2.6e-198 695.7 481 76.7
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 9.9e-198 693.7 479 77.7
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 7.1e-196 687.6 477 76.3
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 9.3e-196 687.2 477 76.3
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 1.6e-195 686.4 478 75.3
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 2.1e-195 686.0 476 75.2
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 2.1e-195 686.0 480 75.0
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 4.6e-195 684.9 477 75.7
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 4.6e-195 684.9 477 75.7
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 1.0e-194 683.7 476 75.0
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 2.3e-194 682.6 476 74.6
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 1.5e-193 679.9 491 75.8
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 2.1e-192 676.0 481 74.8
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 3.6e-192 675.2 481 73.6
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 3.6e-192 675.2 477 74.4
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 5.3e-191 671.4 479 73.9
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 6.9e-191 671.0 505 71.1
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 9.0e-191 670.6 478 74.3
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 2.0e-190 669.5 476 74.4
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 1.3e-189 666.8 474 73.8
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 3.8e-189 665.2 478 73.6
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 1.4e-188 663.3 476 72.7
arahy.Tifrunner.gnm1.ann1.0SF8RD Arachis hypogaea HOM05D003481 ORTHO05D004001 7.1e-188 661.0 493 70.6
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 5.1e-186 654.8 481 71.9
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 8.7e-186 654.1 478 74.1
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 1.9e-185 652.9 474 72.6
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.4e-183 646.7 476 73.7
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 3.4e-182 642.1 476 70.2
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 1.8e-178 629.8 476 70.0
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 3.9e-178 628.6 476 70.2
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 5.1e-178 628.2 476 70.0
Solyc02g030110.2 Solanum lycopersicum HOM05D003481 ORTHO05D004001 6.7e-178 627.9 476 70.0
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 1.1e-177 627.1 479 71.2
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 1.9e-177 626.3 478 70.3
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 4.3e-177 625.2 490 68.8
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 4.3e-177 625.2 478 69.0
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 1.6e-176 623.2 459 73.0
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 3.7e-176 622.1 479 70.8
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 6.9e-175 617.8 480 67.9
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 7.6e-174 614.4 459 73.6
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 3.8e-173 612.1 501 64.9
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 9.3e-172 607.4 476 68.5
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 1.2e-171 607.1 479 68.9
Peaxi162Scf00267g00817 Petunia axillaris HOM05D003481 ORTHO05D004001 1.9e-169 599.7 498 65.5
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 2.5e-169 599.4 476 66.2
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 3.3e-169 599.0 476 66.4
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 5.7e-169 598.2 476 67.4
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 5.7e-169 598.2 476 67.4
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 5.7e-169 598.2 477 67.5
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 2.1e-168 596.3 478 65.7
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 2.8e-168 595.9 476 64.9
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 4.8e-168 595.1 476 66.8
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 6.3e-168 594.7 495 62.8
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 1.1e-167 594.0 476 66.2
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 1.8e-167 593.2 478 65.5
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 2.4e-167 592.8 476 65.8
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 3.1e-167 592.4 476 67.4
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 5.3e-167 591.7 476 64.5
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 6.9e-167 591.3 477 66.0
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 9.0e-167 590.9 478 65.5
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 9.0e-167 590.9 479 64.3
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 2.0e-166 589.7 476 67.0
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 4.5e-166 588.6 490 64.7
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 4.5e-166 588.6 476 66.0
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 5.9e-166 588.2 477 67.1
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 2.2e-165 586.3 476 66.8
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 2.2e-165 586.3 480 63.8
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 2.9e-165 585.9 476 65.8
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 1.4e-164 583.6 475 63.8
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 1.4e-164 583.6 478 65.3
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 2.5e-164 582.8 473 66.0
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 2.7e-163 579.3 478 64.4
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 1.3e-162 577.0 476 65.1
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 3.9e-162 575.5 476 66.4
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 1.9e-161 573.2 478 64.2
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 2.5e-161 572.8 477 65.0
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 2.4e-159 566.2 478 63.0
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 2.5e-156 556.2 538 57.2
ATR1132G011 Amborella trichopoda HOM05D003481 ORTHO05D004001 4.2e-156 555.4 481 62.8
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 9.4e-156 554.3 407 73.0
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 2.3e-146 523.1 480 62.1
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 9.7e-145 517.7 544 54.8
Sabra16G0301200 Salix brachista HOM05D003481 ORTHO05D004001 2.6e-142 509.6 396 69.2
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 3.8e-141 505.8 490 55.1
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 5.0e-141 505.4 481 59.5
Nitab4.5_0000378g0100 Nicotiana tabacum HOM05D003481 ORTHO05D004001 4.2e-140 502.3 451 62.5
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 2.0e-134 483.4 499 53.7
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 9.1e-127 458.0 433 58.4
Haze_05982 Corylus avellana HOM05D003481 ORTHO05D004001 2.2e-120 436.8 306 76.1
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 1.7e-112 410.6 433 53.3
Sabra16G0299600 Salix brachista HOM05D003481 ORTHO05D004001 3.3e-100 369.8 276 72.8
AagrBONN_evm.TU.Sc2ySwM_117.2303 Anthoceros agrestis HOM05D003481 ORTHO05D004001 6.4e-80 302.4 426 44.4
SEGI_29135 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 1.7e-77 294.3 283 57.6
CSS0048234 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 1.8e-74 284.3 178 79.2
Nitab4.5_0001298g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 3.3e-60 236.9 222 56.3
RcHm_v2.0_Chr7g0240301 Rosa chinensis HOM05D003481 ORTHO05D004001 2.8e-59 233.8 398 42.7
SHI31589 Sapria himalayana HOM05D003481 ORTHO05D004001 2.6e-57 227.3 229 57.2
PRCOL_00001035 Prasinoderma coloniale HOM05D003481 ORTHO05D004001 4.6e-54 216.5 426 34.7
CBR_g45268 Chara braunii HOM05D003481 ORTHO05D004001 1.3e-53 214.9 224 53.6
CSS0035493 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 4.3e-52 209.9 128 81.2
Actinidia29308 Actinidia chinensis HOM05D003481 ORTHO05D004001 4.1e-50 203.4 184 62.5
SEGI_21626 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 1.6e-46 191.4 132 75.0
arahy.Tifrunner.gnm1.ann1.16LSI5 Arachis hypogaea HOM05D003481 ORTHO05D004001 2.5e-44 184.1 288 44.4
MBI19_g43313_MAGBIO Magnolia biondii HOM05D003481 ORTHO05D004001 1.5e-41 174.9 224 48.2
Sabra16G0299500 Salix brachista HOM05D003481 ORTHO05D000002 7.7e-41 172.6 173 53.8
Nitab4.5_0001298g0060 Nicotiana tabacum HOM05D003481 ORTHO05D004001 3.2e-39 167.2 170 59.4
MCO09G025 Micromonas commoda HOM05D003481 ORTHO05D004001 2.4e-34 151.0 445 30.1
Cre02.g087551 Chlamydomonas reinhardtii HOM05D003481 ORTHO05D004001 3.8e-32 143.7 436 28.7
SHI31588 Sapria himalayana HOM05D003481 ORTHO05D004001 1.9e-31 141.4 87 85.1
Haze_05980 Corylus avellana HOM05D003481 ORTHO05D004001 5.5e-31 139.8 169 48.5
CBR_g66144 Chara braunii HOM05D003481 ORTHO05D004001 3.6e-30 137.1 82 79.3
Cfa023843 Carpinus fangiana HOM05D003481 ORTHO05D004001 4.4e-28 130.2 468 25.9
Aqoxy3G00998 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 4.1e-26 123.6 118 60.2
Lsat_1_v5_gn_2_79640 Lactuca sativa HOM05D003481 ORTHO05D004001 8.0e-22 109.4 168 44.0
Lsat_1_v5_gn_3_92020 Lactuca sativa HOM05D002302 ORTHO05D002728 4.1e-18 97.1 100 55.0
Lsat_1_v5_gn_0_25080 Lactuca sativa HOM05D003481 ORTHO05D004001 7.0e-18 96.3 167 41.9
SHI31587 Sapria himalayana HOM05D003481 ORTHO05D004001 9.1e-18 95.9 55 80.0
SEGI_05968 Sequoiadendron giganteum HOM05D003481 ORTHO05D011771 2.2e-16 91.3 63 66.7
Oeu001605.1 Olea europaea HOM05D003481 ORTHO05D004001 7.2e-15 86.3 160 36.2
arahy.Tifrunner.gnm1.ann1.SFPI36 Arachis hypogaea HOM05D003481 ORTHO05D004001 4.7e-14 83.6 48 83.3
Lsat_1_v5_gn_0_13620 Lactuca sativa HOM05D002610 ORTHO05D002926 2.2e-11 74.7 76 55.3
HanXRQChr17g0556701 Helianthus annuus HOM05D003481 ORTHO05D004001 9.1e-10 69.3 70 51.4
Lsat_1_v5_gn_9_116960 Lactuca sativa HOM05D003481 ORTHO05D004001 2.7e-09 67.8 52 71.2
SHI31584 Sapria himalayana HOM05D003481 ORTHO05D004001 2.5e-07 61.2 45 62.2


User provided reference genes

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