Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 0.0e+00 1087.0 552 100.0
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 7.5e-226 787.3 614 67.8
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 1.0e-206 723.8 550 67.3
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 4.7e-204 714.9 485 74.4
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 1.0e-203 713.8 547 67.5
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 8.9e-203 710.7 553 67.8
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.2e-202 710.3 548 67.2
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 3.7e-201 705.3 548 66.6
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 1.0e-198 697.2 566 64.7
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 1.0e-198 697.2 552 65.2
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 3.0e-198 695.7 554 65.0
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 1.1e-197 693.7 547 66.0
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 2.1e-196 689.5 551 64.2
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 3.1e-195 685.6 558 64.5
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 4.0e-195 685.3 550 65.1
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 5.2e-195 684.9 552 65.6
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 2.6e-194 682.6 550 64.9
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 4.4e-194 681.8 550 64.5
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 1.1e-192 677.2 550 64.7
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 4.1e-192 675.2 551 63.9
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 7.0e-192 674.5 547 64.4
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 6.6e-190 667.9 548 63.1
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 4.7e-188 661.8 541 63.6
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 1.8e-187 659.8 556 62.6
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 1.8e-187 659.8 544 64.5
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 3.1e-187 659.1 626 57.0
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 2.9e-185 652.5 550 61.8
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.3e-185 651.0 548 61.9
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 3.5e-183 645.6 547 61.8
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 6.0e-183 644.8 549 62.7
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.1e-182 641.7 548 61.5
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 4.3e-181 638.6 583 60.0
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 9.5e-181 637.5 553 62.7
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 2.8e-180 636.0 556 60.3
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 4.7e-180 635.2 548 61.3
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 6.2e-180 634.8 547 61.8
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 3.1e-179 632.5 560 61.2
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 5.2e-179 631.7 551 61.2
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 5.2e-179 631.7 547 60.3
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 6.8e-179 631.3 548 61.1
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 8.9e-179 630.9 549 61.0
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 9.9e-178 627.5 547 59.8
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 2.9e-177 625.9 552 60.0
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 2.9e-177 625.9 552 59.8
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 4.9e-177 625.2 545 59.4
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 4.1e-176 622.1 551 60.6
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 9.2e-176 620.9 549 59.2
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 9.2e-176 620.9 646 52.9
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 3.5e-175 619.0 550 60.4
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 4.6e-175 618.6 549 59.6
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 6.0e-175 618.2 550 59.1
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 7.8e-175 617.8 543 60.2
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 1.7e-174 616.7 557 59.2
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 2.3e-174 616.3 549 59.0
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 3.0e-174 615.9 597 56.1
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 3.9e-174 615.5 549 59.2
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 1.5e-173 613.6 543 59.5
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 1.5e-173 613.6 543 59.5
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 1.5e-173 613.6 543 59.5
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 2.5e-173 612.8 521 61.6
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 4.3e-173 612.1 547 60.0
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 7.3e-173 611.3 569 58.3
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.6e-172 610.1 549 58.8
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 6.2e-172 608.2 549 58.3
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 1.4e-171 607.1 544 60.1
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 3.1e-171 605.9 555 57.5
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 1.2e-170 604.0 546 57.1
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 1.2e-170 604.0 549 59.2
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 1.5e-170 603.6 545 59.3
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 2.0e-170 603.2 544 58.8
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 2.6e-170 602.8 558 59.3
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 2.6e-170 602.8 549 59.2
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 5.8e-170 601.7 536 59.3
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 4.9e-169 598.6 577 56.5
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 4.9e-169 598.6 549 58.1
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 4.2e-168 595.5 546 58.8
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 1.6e-167 593.6 547 56.5
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 4.6e-167 592.0 539 57.5
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 1.5e-165 587.0 654 51.1
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 3.3e-165 585.9 546 59.0
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 2.8e-164 582.8 545 57.2
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 4.8e-164 582.0 536 58.0
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 1.4e-163 580.5 548 57.5
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 3.1e-163 579.3 555 56.8
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 9.0e-163 577.8 483 61.7
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 2.2e-161 573.2 559 56.0
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 1.1e-157 560.8 528 57.0
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 7.4e-157 558.1 567 54.3
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 4.8e-156 555.4 553 55.3
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 8.1e-156 554.7 549 55.9
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.3e-153 547.4 483 59.8
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 1.1e-152 544.3 545 55.0
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 1.9e-152 543.5 562 53.7
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 7.9e-151 538.1 547 54.3
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 1.9e-149 533.5 556 52.3
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 9.6e-149 531.2 426 65.5
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 5.3e-147 525.4 546 55.9
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 1.9e-144 516.9 487 56.7
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 4.6e-143 512.3 468 60.5
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 2.3e-142 510.0 481 57.6
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 1.9e-141 506.9 563 52.2
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 3.3e-141 506.1 615 47.5
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.3e-140 504.2 494 55.3
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 2.2e-137 493.4 431 60.8
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.6e-135 486.1 517 53.0
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 8.7e-134 481.5 545 50.1
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.1e-131 474.6 311 77.8
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 4.1e-131 472.6 394 62.4
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 1.3e-124 451.1 553 46.1
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 5.3e-123 445.7 550 48.0
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 1.4e-120 437.6 562 42.3
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 5.2e-118 429.1 395 60.0
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 6.3e-116 422.2 352 63.9
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 1.1e-115 421.4 550 44.2
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 3.6e-111 406.4 302 69.2
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 1.8e-107 394.0 356 58.4
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 4.1e-107 392.9 423 51.8
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 1.5e-104 384.4 376 55.6
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 5.5e-104 382.5 351 58.4
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 1.6e-103 380.9 418 52.2
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.3e-102 377.1 314 65.0
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 1.2e-101 374.8 420 52.4
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 4.4e-101 372.9 539 44.2
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 3.2e-96 356.7 491 46.2
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 2.8e-92 343.6 418 49.8
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.0e-86 323.6 474 43.5
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 4.0e-86 323.2 548 37.6
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 9.8e-85 318.5 443 44.0
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 4.6e-82 309.7 228 69.3
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.5e-80 304.7 204 75.5
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 4.4e-77 293.1 217 67.3
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 1.2e-71 275.0 286 54.9
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 1.2e-69 268.5 320 49.1
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 4.4e-69 266.5 231 59.7
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 6.4e-68 262.7 379 43.5
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 7.1e-67 259.2 207 65.7
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.3e-62 244.2 224 57.6
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 1.2e-61 241.9 281 48.8
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.0e-61 241.1 184 63.0
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-54 218.4 234 47.4
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 3.1e-54 217.2 358 43.6
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 2.1e-50 204.5 165 61.8
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.1e-50 204.5 281 46.3
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 2.7e-50 204.1 298 46.3
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 1.4e-43 181.8 166 59.0
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 1.9e-43 181.4 166 59.0
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 4.6e-42 176.8 120 70.8
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 8.7e-41 172.6 154 59.1
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 1.3e-36 158.7 221 43.9
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 4.9e-36 156.8 150 56.7
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 7.1e-35 152.9 235 41.7
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 1.2e-29 135.6 191 45.5
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 2.9e-28 131.0 260 39.6
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 6.5e-28 129.8 198 43.4
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 6.3e-23 113.2 122 44.3
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.1e-22 112.5 137 45.3
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 3.4e-21 107.5 593 23.3
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 3.4e-21 107.5 181 37.6
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 8.5e-20 102.8 77 62.3
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 1.4e-19 102.1 108 51.9
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 3.6e-18 97.4 76 61.8
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 1.8e-17 95.1 72 62.5
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 3.0e-17 94.4 128 44.5
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 2.5e-16 91.3 162 39.5
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 4.3e-16 90.5 88 54.5
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 5.7e-16 90.1 77 55.8
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.3e-15 89.0 65 61.5
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 6.3e-15 86.7 623 23.3
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 4.1e-14 84.0 69 62.3
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 6.9e-14 83.2 58 67.2
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 5.0e-12 77.0 48 70.8
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 1.9e-11 75.1 69 58.0
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 1.0e-09 69.3 225 26.7
SalBow3G0229 Salvia bowleyana HOM05D003810 ORTHO05D004416 1.4e-09 68.9 70 50.0
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 6.7e-09 66.6 53 58.5
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 2.6e-08 64.7 50 62.0
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 5.7e-08 63.5 50 58.0
A07p35570 Brassica napus HOM05D003810 ORTHO05D004416 1.8e-06 58.5 51 60.8
BraA07t31145Z Brassica rapa HOM05D003810 ORTHO05D004416 1.8e-06 58.5 51 60.8


User provided reference genes

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