Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 1.8e-204 715.7 355 100.0
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 4.8e-133 478.4 325 75.1
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.2e-131 473.8 289 78.2
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 4.2e-129 465.3 301 74.4
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 3.5e-128 462.2 325 68.9
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 1.0e-127 460.7 330 71.2
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 3.0e-127 459.1 329 69.0
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 1.5e-126 456.8 324 71.0
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 4.3e-126 455.3 326 69.3
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 9.6e-126 454.1 286 76.2
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 6.2e-125 451.4 324 68.8
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.4e-124 450.3 295 72.9
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 1.4e-124 450.3 295 72.9
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 5.3e-124 448.4 295 72.2
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 2.6e-123 446.0 327 67.0
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 2.6e-123 446.0 323 66.6
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.3e-122 443.7 326 67.8
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 2.2e-122 443.0 327 66.4
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 2.5e-121 439.5 324 67.0
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.5e-121 439.5 296 70.3
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 3.2e-121 439.1 331 66.8
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 5.5e-121 438.3 324 67.0
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 2.1e-120 436.4 286 71.7
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 2.3e-119 433.0 323 66.9
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 6.7e-119 431.4 318 66.7
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 1.9e-118 429.9 314 66.9
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.5e-118 429.5 294 69.4
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 4.3e-118 428.7 321 67.0
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 1.3e-117 427.2 295 69.5
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 1.1e-116 424.1 319 64.9
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 9.0e-116 421.0 323 64.7
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 3.8e-114 415.6 308 64.9
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 1.4e-113 413.7 351 60.4
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 1.9e-113 413.3 285 67.4
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 2.1e-112 409.8 319 61.8
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 2.7e-112 409.5 323 59.4
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 2.7e-112 409.5 320 61.6
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 4.6e-112 408.7 292 68.5
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 1.0e-111 407.5 314 63.7
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 2.3e-111 406.4 324 63.0
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 3.9e-111 405.6 311 63.0
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 6.7e-111 404.8 293 65.9
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 2.5e-110 402.9 329 61.4
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 2.5e-110 402.9 329 61.4
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 2.5e-110 402.9 311 62.7
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 4.3e-110 402.1 296 64.9
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 7.4e-110 401.4 326 59.5
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 9.7e-110 401.0 323 60.1
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 4.8e-109 398.7 324 58.6
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 4.8e-109 398.7 249 73.1
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 6.3e-109 398.3 323 61.3
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 1.1e-108 397.5 324 57.7
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.1e-108 396.0 324 60.2
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 6.9e-108 394.8 327 58.4
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 1.2e-107 394.0 249 72.7
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 1.2e-107 394.0 308 62.3
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 2.6e-107 392.9 327 57.5
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 3.4e-107 392.5 316 61.7
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 4.5e-107 392.1 300 63.0
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 1.3e-106 390.6 324 55.9
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 2.2e-106 389.8 329 61.7
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 3.8e-106 389.0 284 60.6
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 3.8e-106 389.0 278 65.1
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 5.0e-106 388.7 246 71.5
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 6.5e-106 388.3 324 56.5
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 1.1e-105 387.5 284 60.9
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 1.1e-105 387.5 324 56.2
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 1.1e-105 387.5 247 73.3
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 3.2e-105 386.0 324 55.2
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 4.2e-105 385.6 284 60.6
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 7.2e-105 384.8 327 56.9
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 7.2e-105 384.8 255 69.4
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 4.6e-104 382.1 320 55.6
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 7.9e-104 381.3 328 54.9
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 1.5e-102 377.1 285 61.1
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 3.3e-102 375.9 271 64.9
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 9.7e-102 374.4 249 69.9
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 1.0e-98 364.4 227 73.1
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 1.0e-98 364.4 280 59.3
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 3.8e-98 362.5 256 66.0
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 1.4e-97 360.5 249 65.5
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 1.2e-96 357.5 283 60.4
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 6.7e-95 351.7 346 55.2
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 9.7e-94 347.8 261 59.4
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 2.8e-93 346.3 301 54.2
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.8e-92 343.6 291 57.0
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.5e-91 340.5 294 58.8
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.7e-90 337.0 321 57.0
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 1.9e-89 333.6 328 50.0
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 2.1e-88 330.1 322 55.0
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 1.0e-87 327.8 324 55.2
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 1.1e-86 324.3 249 65.5
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 1.5e-86 323.9 222 69.8
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.2e-83 314.3 291 54.6
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 3.0e-79 299.7 289 54.0
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 6.8e-79 298.5 194 69.1
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.8e-77 293.1 187 69.5
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 3.1e-76 289.7 558 34.2
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 5.3e-76 288.9 278 48.6
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 7.0e-76 288.5 279 47.7
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 9.1e-76 288.1 189 67.7
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 1.5e-73 280.8 280 51.1
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.0e-71 274.6 319 48.6
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 4.0e-71 272.7 160 76.2
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 2.0e-70 270.4 308 45.5
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.3e-66 257.7 154 74.0
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 1.9e-65 253.8 153 74.5
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 4.7e-56 222.6 272 46.3
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 6.1e-56 222.2 239 52.7
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 8.0e-56 221.9 239 51.9
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 6.8e-55 218.8 148 67.6
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.9e-52 210.7 174 56.9
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 4.1e-52 209.5 166 62.0
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.7e-45 186.4 174 60.9
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 3.2e-44 183.3 111 73.0
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 2.1e-43 180.6 127 60.6
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.5e-41 173.7 200 46.0
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.5e-41 173.7 232 43.5
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 5.8e-38 162.5 166 52.4
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 7.6e-38 162.2 215 34.9
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 9.2e-36 155.2 286 35.3
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 3.9e-34 149.8 127 56.7
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 4.4e-30 136.3 128 54.7
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 7.6e-30 135.6 141 57.4
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 2.9e-29 133.7 100 65.0
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 3.2e-28 130.2 129 53.5
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 4.2e-28 129.8 73 75.3
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 8.4e-21 105.5 76 59.2
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 1.4e-20 104.8 161 43.5
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 9.6e-17 92.0 67 68.7
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.8e-15 87.8 85 49.4
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 4.5e-14 83.2 72 62.5
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 1.3e-10 71.6 104 42.3
Haze_25177 Corylus avellana HOM05D005815 ORTHO05D007023 2.4e-07 60.8 41 73.2
AL1G44350 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 5.3e-07 59.7 58 50.0


User provided reference genes

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