Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G132001 Manihot esculenta HOM05D001730 ORTHO05D023306 1.5e-34 149.1 78 100.0
Manes.01G093400 Manihot esculenta HOM05D001730 ORTHO05D004519 3.1e-29 131.3 72 97.2
EL10Ac2g03004 Beta vulgaris HOM05D001730 ORTHO05D004519 1.4e-16 89.4 73 68.5
Dinv34126 Davidia involucrata HOM05D001730 ORTHO05D004519 8.9e-16 86.7 77 62.3
Manes.02G048100 Manihot esculenta HOM05D001730 ORTHO05D004519 8.9e-16 86.7 74 68.9
Ah.10g031760 Amaranthus hybridus HOM05D001730 ORTHO05D004519 1.5e-15 85.9 80 66.2
Actinidia26229 Actinidia chinensis HOM05D001730 ORTHO05D004519 2.0e-15 85.5 73 65.8
Lj3C1034G14 Lonicera japonica HOM05D001730 ORTHO05D004519 2.6e-15 85.1 71 63.4
Cpa.g.c28082.1 Carica papaya HOM05D001730 ORTHO05D004519 4.4e-15 84.3 82 58.5
Rhsim08G0071000 Rhododendron simsii HOM05D001730 ORTHO05D004519 4.4e-15 84.3 71 63.4
Prupe.3G264300 Prunus persica HOM05D001730 ORTHO05D004519 7.5e-15 83.6 78 62.8
Hund13191 Selenicereus undatus HOM05D001730 ORTHO05D004519 7.5e-15 83.6 73 65.8
Actinidia26230 Actinidia chinensis HOM05D001730 ORTHO05D004519 9.8e-15 83.2 72 63.9
vmacro18181 Vaccinium macrocarpon HOM05D001730 ORTHO05D004519 9.8e-15 83.2 66 68.2
MD17G1051900 Malus domestica HOM05D001730 ORTHO05D004519 1.3e-14 82.8 78 59.0
MD09G1054200 Malus domestica HOM05D001730 ORTHO05D004519 2.2e-14 82.0 78 60.3
Dinv33778 Davidia involucrata HOM05D001730 ORTHO05D004519 2.9e-14 81.6 75 64.0
Actinidia17559 Actinidia chinensis HOM05D001730 ORTHO05D023306 3.7e-14 81.3 73 61.6
CANSAT64G1919 Cannabis sativa HOM05D001730 ORTHO05D004519 4.9e-14 80.9 47 78.7
Sabra17G0076200 Salix brachista HOM05D001730 ORTHO05D004519 4.9e-14 80.9 76 61.8
Gorai.012G052100 Gossypium raimondii HOM05D001730 ORTHO05D004519 6.3e-14 80.5 66 63.6
Atru.chr8.312 Acer truncatum HOM05D001730 ORTHO05D004519 8.3e-14 80.1 77 59.7
Potri.017G086500 Populus trichocarpa HOM05D001730 ORTHO05D004519 8.3e-14 80.1 44 88.6
Dinv11510 Davidia involucrata HOM05D001730 ORTHO05D004519 1.1e-13 79.7 75 61.3
Hma1.2p1_0409F.1_g146780 Hydrangea macrophylla HOM05D001730 ORTHO05D004519 1.4e-13 79.3 85 56.5
CSS0001636 Camellia sinensis var. sinensis HOM05D001730 ORTHO05D004519 1.8e-13 79.0 73 63.0
CSS0022883 Camellia sinensis var. sinensis HOM05D001730 ORTHO05D004519 1.8e-13 79.0 73 63.0
Gohir.D04G046900 Gossypium hirsutum HOM05D001730 ORTHO05D004519 1.8e-13 79.0 66 62.1
PGSC0003DMG400008477 Solanum tuberosum HOM05D001730 ORTHO05D004519 2.4e-13 78.6 72 61.1
THA.LOC104821018 Tarenaya hassleriana HOM05D001730 ORTHO05D004519 3.2e-13 78.2 47 78.7
Lj1g0005155 Lotus japonicus HOM05D001730 ORTHO05D004519 4.1e-13 77.8 74 64.9
Peaxi162Scf00629g00115 Petunia axillaris HOM05D001730 ORTHO05D004519 4.1e-13 77.8 72 62.5
SGA_v2.0_scaffold4G02433 Striga asiatica HOM05D001730 ORTHO05D004519 4.1e-13 77.8 72 63.9
TAR622G1345 Trochodendron aralioides HOM05D001730 ORTHO05D004519 4.1e-13 77.8 71 62.0
AUR62018105 Chenopodium quinoa HOM05D001730 ORTHO05D004519 5.4e-13 77.4 63 63.5
AUR62034439 Chenopodium quinoa HOM05D001730 ORTHO05D004519 5.4e-13 77.4 63 63.5
A05p44840 Brassica napus HOM05D001730 ORTHO05D004519 7.0e-13 77.0 49 73.5
BraA05t23173Z Brassica rapa HOM05D001730 ORTHO05D004519 7.0e-13 77.0 49 73.5
CARHR075930 Cardamine hirsuta HOM05D001730 ORTHO05D004519 9.2e-13 76.6 51 72.5
Thhalv10020394m.g Eutrema salsugineum HOM05D001730 ORTHO05D004519 9.2e-13 76.6 49 73.5
Lsat_1_v5_gn_4_169480 Lactuca sativa HOM05D001730 ORTHO05D004519 9.2e-13 76.6 79 57.0
BcaC01g04503 Brassica carinata HOM05D001730 ORTHO05D004519 1.2e-12 76.3 49 73.5
BolC3t16244H Brassica oleracea HOM05D001730 ORTHO05D002202 1.2e-12 76.3 49 73.5
FvH4_6g48090 Fragaria vesca HOM05D001730 ORTHO05D004519 1.2e-12 76.3 66 63.6
FAN02G1975 Fragaria x ananassa HOM05D001730 ORTHO05D004519 1.2e-12 76.3 66 63.6
FAN05G3129 Fragaria x ananassa HOM05D001730 ORTHO05D004519 1.2e-12 76.3 66 63.6
FAN14G4386 Fragaria x ananassa HOM05D001730 ORTHO05D004519 1.2e-12 76.3 66 63.6
PGR004G0017 Punica granatum HOM05D001730 ORTHO05D004519 1.2e-12 76.3 81 59.3
RcHm_v2.0_Chr2g0167411 Rosa chinensis HOM05D001730 ORTHO05D004519 1.2e-12 76.3 66 63.6
VMungo1383G2111 Vigna mungo HOM05D001730 ORTHO05D004519 1.2e-12 76.3 78 59.0
BcaC05g30383 Brassica carinata HOM05D001730 ORTHO05D004519 1.6e-12 75.9 48 72.9
Migut.H00682 Erythranthe guttata HOM05D001730 ORTHO05D004519 1.6e-12 75.9 73 63.0
HanXRQChr09g0262661 Helianthus annuus HOM05D001730 ORTHO05D004519 1.6e-12 75.9 68 61.8
Lalb_Chr02g0159171 Lupinus albus HOM05D001730 ORTHO05D004519 1.6e-12 75.9 80 60.0
TAR365G0180 Trochodendron aralioides HOM05D001730 ORTHO05D004519 1.6e-12 75.9 72 63.9
Nitab4.5_0003975g0010 Nicotiana tabacum HOM05D001730 ORTHO05D004519 2.0e-12 75.5 80 60.0
Oeu000840.3 Olea europaea HOM05D001730 ORTHO05D004519 2.0e-12 75.5 77 59.7
FAN09G3279 Fragaria x ananassa HOM05D001730 ORTHO05D004519 2.7e-12 75.1 57 68.4
Peaxi162Scf00451g00513 Petunia axillaris HOM05D001730 ORTHO05D004519 2.7e-12 75.1 74 63.5
AL3G11140 Arabidopsis lyrata HOM05D001730 ORTHO05D004519 3.5e-12 74.7 48 72.9
C03p39800 Brassica napus HOM05D000321 ORTHO05D002202 3.5e-12 74.7 46 76.1
Carub.0003s0105 Capsella rubella HOM05D001730 ORTHO05D004519 3.5e-12 74.7 48 72.9
Cfa007583 Carpinus fangiana HOM05D001730 ORTHO05D004519 3.5e-12 74.7 48 77.1
Migut.K01306 Erythranthe guttata HOM05D001730 ORTHO05D004519 3.5e-12 74.7 67 64.2
Nn3g17310 Nelumbo nucifera HOM05D001730 ORTHO05D004519 3.5e-12 74.7 72 62.5
PSO832G3607 Papaver somniferum HOM05D001730 ORTHO05D004519 3.5e-12 74.7 74 59.5
TPR.G33603 Trifolium pratense HOM05D001730 ORTHO05D004519 3.5e-12 74.7 79 57.0
HPP92_018345 Vanilla planifolia HOM05D001730 ORTHO05D004519 3.5e-12 74.7 74 54.1
arahy.Tifrunner.gnm1.ann1.AGM2GS Arachis hypogaea HOM05D001730 ORTHO05D004519 4.6e-12 74.3 77 58.4
arahy.Tifrunner.gnm1.ann1.S7AN2D Arachis hypogaea HOM05D001730 ORTHO05D004519 4.6e-12 74.3 77 58.4
Phvul.008G038100 Phaseolus vulgaris HOM05D001730 ORTHO05D004519 4.6e-12 74.3 58 70.7
Sp3g01000 Schrenkiella parvula HOM05D001730 ORTHO05D004519 4.6e-12 74.3 46 73.9
C09p75430 Brassica napus HOM05D001730 ORTHO05D004519 5.9e-12 73.9 49 71.4
ECA232G2365 Erigeron canadensis HOM05D001730 ORTHO05D004519 5.9e-12 73.9 62 64.5
Glyma.09G235400 Glycine max HOM05D001730 ORTHO05D004519 5.9e-12 73.9 77 58.4
Nitab4.5_0000568g0140 Nicotiana tabacum HOM05D001730 ORTHO05D004519 5.9e-12 73.9 75 58.7
Psat3g199280 Pisum sativum HOM05D001730 ORTHO05D004519 5.9e-12 73.9 79 58.2
Solyc02g067180.3 Solanum lycopersicum HOM05D001730 ORTHO05D004519 5.9e-12 73.9 75 60.0
COL.COLO4_10343 Corchorus olitorius HOM05D001730 ORTHO05D004519 7.8e-12 73.6 47 74.5
SalBow1G3742 Salvia bowleyana HOM05D001730 ORTHO05D004519 7.8e-12 73.6 40 87.5
Sopen02g016340 Solanum pennellii HOM05D001730 ORTHO05D004519 7.8e-12 73.6 75 60.0
Aa31LG5G12510 Aethionema arabicum HOM05D001730 ORTHO05D004519 1.0e-11 73.2 46 71.7
MSTRG.23920 Avicennia marina HOM05D001730 ORTHO05D004519 1.0e-11 73.2 74 58.1
BcaC05g30493 Brassica carinata HOM05D001730 ORTHO05D004519 1.0e-11 73.2 46 71.7
CAN.G979.1 Capsicum annuum HOM05D001730 ORTHO05D004519 1.0e-11 73.2 73 58.9
Duzib147G0211 Durio zibethinus HOM05D001730 ORTHO05D004519 1.0e-11 73.2 47 74.5
A03p32700 Brassica napus HOM05D000321 ORTHO05D000204 1.3e-11 72.8 46 73.9
BolC5t35117H Brassica oleracea HOM05D001730 ORTHO05D004519 1.3e-11 72.8 48 70.8
Haze_14505 Corylus avellana HOM05D001730 ORTHO05D004519 1.3e-11 72.8 48 75.0
Nitab4.5_0000118g0010 Nicotiana tabacum HOM05D001730 ORTHO05D004519 1.3e-11 72.8 59 67.8
Thecc.04G086600 Theobroma cacao HOM05D001730 ORTHO05D004519 1.7e-11 72.4 65 58.5
Aqoxy3G03468 Aquilegia oxysepala HOM05D001730 ORTHO05D004519 2.3e-11 72.0 63 63.5
Cc07_g03590 Coffea canephora HOM05D001730 ORTHO05D004519 2.3e-11 72.0 63 60.3
Duzib187G1340 Durio zibethinus HOM05D001730 ORTHO05D004519 2.3e-11 72.0 49 71.4
Nitab4.5_0000212g0080 Nicotiana tabacum HOM05D001730 ORTHO05D004519 2.9e-11 71.6 79 53.2
AT3G01120 Arabidopsis thaliana HOM05D001730 ORTHO05D004519 3.9e-11 71.2 47 70.2
Glyma.18G261600 Glycine max HOM05D001730 ORTHO05D004519 3.9e-11 71.2 81 54.3
PSO063G6669 Papaver somniferum HOM05D001730 ORTHO05D004519 3.9e-11 71.2 56 69.6
Sed0026483 Sechium edule HOM05D001730 ORTHO05D004519 3.9e-11 71.2 53 73.6
CAN.G127.23 Capsicum annuum HOM05D001730 ORTHO05D004519 5.0e-11 70.9 70 60.0
Gohir.A05G368400 Gossypium hirsutum HOM05D001730 ORTHO05D004519 5.0e-11 70.9 65 58.5
Gorai.001G240000 Gossypium raimondii HOM05D001730 ORTHO05D004519 5.0e-11 70.9 50 72.0
MBI05_g05246_MAGBIO Magnolia biondii HOM05D001730 ORTHO05D004519 5.0e-11 70.9 66 60.6
Sc11g0007160 Simmondsia chinensis HOM05D001730 ORTHO05D004519 5.0e-11 70.9 65 55.4
HanXRQChr11g0325161 Helianthus annuus HOM05D001730 ORTHO05D004519 6.6e-11 70.5 39 84.6
Eucgr.I01959 Eucalyptus grandis HOM05D001730 ORTHO05D004519 8.6e-11 70.1 40 82.5
BraA03t12438Z Brassica rapa HOM05D001730 ORTHO05D004519 1.1e-10 69.7 42 76.2
CiPaw.03G024300 Carya illinoinensis HOM05D001730 ORTHO05D004519 1.1e-10 69.7 40 80.0
TWI60G1242 Tripterygium wilfordii HOM05D001730 ORTHO05D004519 1.1e-10 69.7 42 76.2
Ciclev10011434m.g Citrus clementina HOM05D001730 ORTHO05D004519 1.5e-10 69.3 39 82.1
Nitab4.5_0001591g0250 Nicotiana tabacum HOM05D001730 ORTHO05D004519 1.5e-10 69.3 78 53.8
Ca_06787_v3 Cicer arietinum L. HOM05D001730 ORTHO05D004519 1.9e-10 68.9 81 54.3
Medtr7g011230 Medicago truncatula HOM05D001730 ORTHO05D004519 1.9e-10 68.9 48 75.0
MSTRG.3335 Avicennia marina HOM05D001730 ORTHO05D004519 2.5e-10 68.6 71 56.3
CSS0028295 Camellia sinensis var. sinensis HOM05D001730 ORTHO05D004519 2.5e-10 68.6 40 80.0
arahy.Tifrunner.gnm1.ann1.I2BVW6 Arachis hypogaea HOM05D001730 ORTHO05D004519 3.3e-10 68.2 61 60.7
DCAR_025856 Daucus carota HOM05D001730 ORTHO05D004519 3.3e-10 68.2 54 68.5
QL02p084735 Quercus lobata HOM05D001730 ORTHO05D004519 3.3e-10 68.2 36 86.1
arahy.Tifrunner.gnm1.ann1.0JH0K6 Arachis hypogaea HOM05D001730 ORTHO05D004519 5.6e-10 67.4 61 59.0
Gohir.D07G212300 Gossypium hirsutum HOM05D001730 ORTHO05D004519 9.5e-10 66.6 54 68.5
Thecc.06G096500 Theobroma cacao HOM05D001730 ORTHO05D023306 1.2e-09 66.2 65 55.4
Gohir.A07G206200 Gossypium hirsutum HOM05D001730 ORTHO05D004519 1.6e-09 65.9 49 69.4
CDE02G0445 Ceratophyllum demersum HOM05D001730 ORTHO05D004519 2.8e-09 65.1 64 56.2
Gorai.001G240300 Gossypium raimondii HOM05D001730 ORTHO05D004519 2.8e-09 65.1 54 68.5
Oeu015939.1 Olea europaea HOM05D001730 ORTHO05D023306 3.6e-09 64.7 72 54.2
Peaxi162Scf00166g01052 Petunia axillaris HOM05D001730 ORTHO05D004519 3.6e-09 64.7 75 53.3
ATR0752G123 Amborella trichopoda HOM05D001730 ORTHO05D004519 6.2e-09 63.9 60 60.0
ClCG10G015340 Citrullus lanatus HOM05D001730 ORTHO05D004519 6.2e-09 63.9 35 85.7
MELO3C009845.2 Cucumis melo HOM05D001730 ORTHO05D004519 6.2e-09 63.9 35 85.7
CsaV3_3G041150 Cucumis sativus L. HOM05D001730 ORTHO05D004519 6.2e-09 63.9 35 85.7
AagrBONN_evm.TU.Sc2ySwM_362.2686 Anthoceros agrestis HOM05D001730 ORTHO05D004519 8.0e-09 63.5 63 61.9
CAN.G991.4 Capsicum annuum HOM05D001730 ORTHO05D115372 8.0e-09 63.5 67 56.7
CDE09G0505 Ceratophyllum demersum HOM05D001730 ORTHO05D004519 8.0e-09 63.5 64 56.2
GSVIVG01011450001 Vitis vinifera HOM05D001730 ORTHO05D004519 8.0e-09 63.5 36 86.1
Cc00_g29950 Coffea canephora HOM05D001730 ORTHO05D023306 2.3e-08 62.0 44 70.5
SMO351G0107 Selaginella moellendorffii HOM05D001730 ORTHO05D004519 1.5e-07 59.3 52 63.5
Pp3c20_1550 Physcomitrium patens HOM05D001730 ORTHO05D004519 2.6e-07 58.5 65 55.4
Mapoly0022s0171 Marchantia polymorpha HOM05D001730 ORTHO05D004519 5.8e-07 57.4 50 64.0
Pp3c23_18410 Physcomitrium patens HOM05D001730 ORTHO05D004519 1.7e-06 55.8 69 52.2
BcaC03g13415 Brassica carinata HOM05D001730 ORTHO05D004519 3.7e-06 54.7 53 54.7
C02p07670 Brassica napus HOM05D001730 ORTHO05D004519 3.7e-06 54.7 53 54.7
BolC2t06698H Brassica oleracea HOM05D001730 ORTHO05D004519 3.7e-06 54.7 53 54.7
SEGI_35498 Sequoiadendron giganteum HOM05D001730 ORTHO05D004519 4.9e-06 54.3 60 53.3


User provided reference genes

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