Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 5.9e-65 250.8 129 100.0
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 8.2e-59 230.3 129 89.9
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.8e-58 229.2 129 89.1
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 4.1e-58 228.0 129 89.9
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 4.5e-57 224.6 129 88.4
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 5.9e-57 224.2 129 87.6
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 1.0e-56 223.4 129 88.4
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.7e-56 222.6 130 90.0
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.7e-56 222.6 130 89.2
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 3.8e-56 221.5 129 86.8
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 5.0e-56 221.1 130 87.7
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 6.5e-56 220.7 129 84.5
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 1.9e-55 219.2 130 89.2
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.9e-55 219.2 129 83.7
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 2.5e-55 218.8 130 87.7
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 7.2e-55 217.2 130 87.7
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 1.2e-54 216.5 124 85.5
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 1.6e-54 216.1 129 83.7
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 2.1e-54 215.7 128 85.2
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 3.6e-54 214.9 124 84.7
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 4.7e-54 214.5 129 82.9
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 4.7e-54 214.5 129 82.9
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 6.1e-54 214.2 129 86.0
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 7.9e-54 213.8 124 84.7
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 1.0e-53 213.4 124 84.7
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 1.0e-53 213.4 129 81.4
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 1.0e-53 213.4 129 81.4
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 1.0e-53 213.4 129 83.7
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 1.8e-53 212.6 129 81.4
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.8e-53 212.6 129 81.4
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 2.3e-53 212.2 131 81.7
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.3e-53 212.2 126 82.5
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 2.3e-53 212.2 126 82.5
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 2.3e-53 212.2 126 82.5
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 2.3e-53 212.2 129 81.4
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 3.0e-53 211.8 129 85.3
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 3.9e-53 211.5 129 80.6
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 6.7e-53 210.7 129 80.6
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 8.8e-53 210.3 124 83.9
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 1.1e-52 209.9 125 81.6
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 2.0e-52 209.1 131 80.9
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 2.0e-52 209.1 130 82.3
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 2.0e-52 209.1 129 83.7
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 4.4e-52 208.0 129 79.1
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.3e-51 206.5 126 81.0
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 2.2e-51 205.7 124 81.5
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 2.8e-51 205.3 129 79.8
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 3.7e-51 204.9 127 79.5
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 3.7e-51 204.9 129 79.1
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 4.8e-51 204.5 127 79.5
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 4.8e-51 204.5 126 81.0
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 8.2e-51 203.8 127 79.5
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 8.2e-51 203.8 127 79.5
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.1e-50 203.4 127 78.7
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.4e-50 203.0 133 79.7
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 1.4e-50 203.0 128 82.0
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 1.8e-50 202.6 127 78.0
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 1.8e-50 202.6 124 80.6
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 2.4e-50 202.2 147 72.1
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 3.1e-50 201.8 130 80.8
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 3.1e-50 201.8 124 79.8
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 4.1e-50 201.4 130 80.8
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 4.1e-50 201.4 126 79.4
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 1.2e-49 199.9 130 80.8
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 1.2e-49 199.9 130 77.7
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.2e-49 199.9 126 80.2
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 1.2e-49 199.9 123 80.5
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 1.6e-49 199.5 127 76.4
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.0e-49 199.1 123 79.7
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 3.5e-49 198.4 136 72.8
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 5.9e-49 197.6 126 81.0
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 5.9e-49 197.6 126 81.0
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 1.0e-48 196.8 131 75.6
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.3e-48 196.4 127 75.6
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 1.3e-48 196.4 125 80.0
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 1.3e-48 196.4 123 79.7
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 2.9e-48 195.3 122 79.5
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 5.0e-48 194.5 127 74.8
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 6.5e-48 194.1 131 74.8
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 8.5e-48 193.7 131 75.6
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 1.9e-47 192.6 127 76.4
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 1.9e-47 192.6 140 72.9
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 3.2e-47 191.8 124 75.0
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 5.5e-47 191.0 130 73.1
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 7.2e-47 190.7 131 74.0
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 7.2e-47 190.7 124 74.2
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 1.6e-46 189.5 129 76.0
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 1.6e-46 189.5 122 77.0
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 4.7e-46 188.0 126 73.8
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 8.0e-46 187.2 126 72.2
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 1.0e-45 186.8 167 61.7
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 3.0e-45 185.3 129 76.7
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 4.0e-45 184.9 127 74.8
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 8.8e-45 183.7 122 76.2
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 1.5e-44 183.0 132 73.5
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 2.0e-44 182.6 119 73.1
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 9.7e-44 180.3 100 86.0
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 9.7e-44 180.3 132 68.9
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 9.7e-44 180.3 132 68.9
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 1.7e-43 179.5 105 83.8
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 2.8e-43 178.7 129 71.3
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 4.8e-43 177.9 131 70.2
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 4.8e-43 177.9 131 70.2
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 4.8e-43 177.9 131 70.2
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 1.4e-42 176.4 105 81.9
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 1.4e-42 176.4 102 80.4
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 1.8e-42 176.0 115 75.7
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 1.8e-42 176.0 115 75.7
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 1.8e-42 176.0 122 74.6
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 2.4e-42 175.6 127 71.7
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 3.1e-42 175.3 125 72.8
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 3.1e-42 175.3 120 74.2
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 3.1e-42 175.3 121 75.2
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 5.3e-42 174.5 119 72.3
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 5.3e-42 174.5 121 74.4
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.2e-41 173.3 92 92.4
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 1.6e-41 172.9 110 77.3
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 2.7e-41 172.2 167 56.3
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 3.5e-41 171.8 127 66.9
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 5.9e-41 171.0 129 65.1
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 5.9e-41 171.0 104 80.8
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.3e-40 169.9 156 62.2
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 8.5e-40 167.2 162 58.6
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 2.3e-37 159.1 125 69.6
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 5.2e-37 157.9 95 80.0
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 2.6e-36 155.6 113 65.5
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 9.8e-36 153.7 87 83.9
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.3e-35 153.3 109 66.1
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 1.3e-35 153.3 96 78.1
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 2.2e-35 152.5 128 59.4
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 8.3e-35 150.6 111 63.1
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.4e-34 149.8 128 57.8
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 5.4e-34 147.9 110 60.0
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 2.7e-33 145.6 92 79.3
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 3.5e-33 145.2 111 59.5
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 7.7e-33 144.1 93 76.3
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 1.0e-32 143.7 127 62.2
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 8.6e-32 140.6 101 63.4
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 2.5e-31 139.0 122 61.5
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 3.2e-31 138.7 127 60.6
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 1.4e-29 133.3 106 60.4
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 4.0e-29 131.7 82 80.5
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 5.7e-28 127.9 83 79.5
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 1.8e-26 122.9 76 77.6
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 1.6e-25 119.8 78 74.4
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 3.5e-25 118.6 69 82.6
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 4.5e-25 118.2 63 85.7
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 1.0e-24 117.1 90 64.4
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 9.5e-23 110.5 105 51.4
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 6.1e-22 107.8 95 57.9
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 5.7e-20 101.3 124 50.0
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 2.2e-19 99.4 61 77.0
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 6.4e-19 97.8 103 43.7
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 3.5e-17 92.0 70 65.7
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 5.9e-17 91.3 89 48.3
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 1.2e-14 83.6 114 43.9
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 5.8e-12 74.7 65 60.0
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 3.7e-11 72.0 47 72.3
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 2.4e-10 69.3 93 33.3
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 2.3e-08 62.8 35 85.7
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 3.6e-06 55.5 90 30.0


User provided reference genes

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