Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 3.0e-226 788.1 379 100.0
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 2.2e-192 675.6 378 84.4
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 2.0e-190 669.1 377 82.0
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 1.0e-189 666.8 379 82.8
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 2.9e-189 665.2 372 83.6
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 1.5e-188 662.9 379 81.0
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 4.2e-188 661.4 377 80.4
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 9.4e-188 660.2 379 80.7
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 1.6e-187 659.4 379 80.7
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 2.1e-187 659.1 379 80.5
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 6.1e-187 657.5 379 79.2
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.0e-186 656.8 379 79.9
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 1.0e-186 656.8 379 80.2
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 1.8e-186 656.0 379 79.7
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 3.0e-186 655.2 378 79.9
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 5.2e-186 654.4 379 79.2
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 5.2e-186 654.4 379 79.9
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 3.4e-185 651.7 374 81.3
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 9.8e-185 650.2 381 79.8
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.8e-184 648.7 379 80.5
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 1.6e-179 632.9 378 77.5
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 6.1e-179 630.9 373 78.3
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 6.1e-179 630.9 373 78.3
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 8.0e-179 630.6 379 76.0
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 1.8e-178 629.4 373 77.7
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 1.8e-178 629.4 373 77.7
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 1.8e-178 629.4 373 77.7
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 1.8e-178 629.4 374 78.6
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 2.3e-178 629.0 373 77.5
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 3.0e-178 628.6 373 77.5
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 4.0e-178 628.2 373 78.0
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 6.8e-178 627.5 373 77.7
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 6.8e-178 627.5 373 77.2
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 2.0e-177 625.9 373 77.2
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 4.9e-176 621.3 386 76.2
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 4.9e-176 621.3 380 76.1
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 2.4e-175 619.0 375 77.1
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 2.4e-175 619.0 388 74.5
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 9.2e-175 617.1 374 77.5
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 2.0e-174 615.9 374 77.8
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 3.5e-174 615.1 374 77.3
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 4.5e-174 614.8 379 74.9
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 4.5e-174 614.8 374 77.0
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 2.9e-173 612.1 379 75.7
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 1.5e-172 609.8 377 74.0
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 9.5e-172 607.1 380 75.0
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 3.6e-171 605.1 392 74.2
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 4.7e-171 604.7 377 73.5
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 6.1e-171 604.4 381 72.2
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 1.4e-170 603.2 375 75.5
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 1.4e-170 603.2 383 73.6
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 4.0e-170 601.7 340 81.5
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 8.9e-170 600.5 378 75.4
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 1.5e-169 599.7 383 72.3
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 2.2e-168 595.9 380 73.9
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 4.9e-168 594.7 382 74.9
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 4.9e-168 594.7 381 72.4
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 2.4e-167 592.4 376 72.6
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 4.1e-167 591.7 418 68.2
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 7.0e-167 590.9 379 72.8
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 2.3e-165 585.9 361 77.3
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 3.0e-165 585.5 404 69.3
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 3.9e-165 585.1 384 73.2
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 1.5e-164 583.2 379 71.8
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 2.5e-164 582.4 369 74.3
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 1.6e-163 579.7 379 72.6
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 2.1e-163 579.3 376 69.7
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.4e-162 576.6 356 75.6
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 4.0e-162 575.1 334 79.9
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 1.5e-161 573.2 379 71.2
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 3.7e-160 568.5 384 70.3
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 1.1e-159 567.0 380 71.6
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 1.1e-159 567.0 369 73.7
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 3.2e-159 565.5 327 80.4
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 5.4e-159 564.7 379 72.6
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.0e-157 560.5 383 70.5
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 1.3e-157 560.1 370 71.6
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 6.6e-157 557.8 335 77.3
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 4.3e-156 555.1 388 69.6
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 4.7e-155 551.6 370 70.0
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 6.2e-155 551.2 359 73.3
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 2.0e-153 546.2 321 79.1
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 5.8e-153 544.7 379 67.5
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 7.5e-153 544.3 369 71.0
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 1.7e-152 543.1 378 68.3
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 3.7e-152 542.0 379 67.5
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 6.4e-152 541.2 370 70.3
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 1.9e-151 539.7 335 75.2
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 4.1e-151 538.5 375 67.7
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 3.5e-150 535.4 380 67.9
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 1.0e-149 533.9 379 66.5
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 3.3e-148 528.9 374 67.6
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 3.3e-148 528.9 374 67.4
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 1.2e-147 526.9 374 67.6
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 1.6e-147 526.6 281 85.1
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 2.1e-147 526.2 374 66.6
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 2.8e-147 525.8 371 69.0
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 3.6e-147 525.4 374 66.8
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 1.1e-146 523.9 372 65.9
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 2.6e-145 519.2 374 65.8
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 2.6e-145 519.2 374 66.6
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 7.6e-145 517.7 374 66.0
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 3.9e-141 505.4 378 63.8
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 3.9e-141 505.4 378 63.8
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 1.5e-140 503.4 379 64.6
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 4.3e-140 501.9 253 89.7
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 4.3e-140 501.9 356 70.2
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 1.2e-139 500.4 379 64.1
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 9.9e-137 490.7 377 61.3
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 2.3e-133 479.6 374 62.3
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 2.8e-131 472.6 379 64.1
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 5.8e-129 464.9 253 83.0
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.8e-125 453.4 386 55.2
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 2.3e-125 453.0 363 59.2
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 1.5e-124 450.3 253 78.7
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 3.4e-121 439.1 386 53.6
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 2.9e-120 436.0 281 71.9
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 2.4e-119 433.0 378 54.2
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 2.1e-118 429.9 381 53.5
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 3.9e-109 399.1 376 54.3
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 1.3e-107 394.0 224 80.4
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 7.2e-103 378.3 306 61.8
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 9.4e-95 351.3 309 56.6
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 3.7e-83 312.8 540 36.3
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 3.0e-77 293.1 220 67.3
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 7.0e-74 282.0 220 64.5
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.6e-73 280.8 147 87.1
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.9e-72 276.6 144 87.5
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 1.2e-68 264.6 267 50.6
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 1.7e-67 260.8 213 63.8
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 4.8e-67 259.2 367 38.4
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 1.5e-60 237.7 134 80.6
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 8.6e-56 221.9 153 69.9
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 1.2e-54 218.0 147 71.4
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 1.4e-45 188.0 112 72.3
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 2.7e-41 173.7 158 52.5
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 3.1e-37 160.2 237 34.6
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 2.2e-35 154.1 92 70.7
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 6.6e-32 142.5 288 32.3
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 1.4e-26 124.8 147 51.0
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 4.3e-23 113.2 59 88.1
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 2.4e-21 107.5 57 78.9
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 6.9e-21 105.9 66 74.2
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.9e-18 97.8 52 78.8
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 6.2e-14 82.8 57 68.4
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 1.8e-13 81.3 73 56.2
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 3.1e-13 80.5 48 79.2
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 3.7e-06 57.0 37 64.9


User provided reference genes

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