Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 0.0e+00 1454.5 731 100.0
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1198.3 663 90.0
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 0.0e+00 1191.4 649 91.4
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1191.4 679 88.4
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1189.1 679 88.2
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 0.0e+00 1181.4 648 90.4
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 0.0e+00 1176.4 658 89.1
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1176.4 653 88.8
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1175.6 656 89.2
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1174.5 675 87.4
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1174.5 650 89.4
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 0.0e+00 1173.3 678 85.8
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1172.9 641 90.5
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1172.5 722 83.1
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1172.1 695 84.9
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1171.4 685 85.3
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1170.2 664 88.6
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1170.2 660 88.5
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1168.7 660 88.3
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1167.5 690 84.8
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1166.4 708 83.6
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 0.0e+00 1164.4 720 81.8
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1162.5 679 86.0
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1161.4 702 83.3
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 0.0e+00 1161.0 679 84.8
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 0.0e+00 1159.8 656 87.3
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1159.1 742 81.4
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 0.0e+00 1158.3 676 85.2
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 0.0e+00 1155.2 642 88.0
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1153.3 695 82.7
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1152.9 678 84.8
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 0.0e+00 1151.0 678 85.5
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 0.0e+00 1150.2 680 85.6
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 0.0e+00 1150.2 733 80.9
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1149.4 721 81.0
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 0.0e+00 1143.6 627 89.6
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 0.0e+00 1143.3 730 80.8
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1142.9 704 82.8
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1142.5 690 83.9
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1141.7 658 86.8
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1139.4 703 82.4
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1138.3 695 82.2
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 0.0e+00 1137.1 653 85.1
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 0.0e+00 1135.6 709 81.8
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 0.0e+00 1133.2 725 79.2
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1131.3 703 82.8
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 0.0e+00 1127.9 686 83.8
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 0.0e+00 1127.5 687 81.7
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 0.0e+00 1127.1 654 85.3
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1127.1 719 80.7
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 0.0e+00 1122.8 682 82.6
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1122.5 674 83.4
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1120.5 719 80.3
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1119.8 675 83.0
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 0.0e+00 1118.6 676 82.2
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 0.0e+00 1118.6 676 82.2
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1117.8 759 75.9
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1117.8 759 75.9
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 0.0e+00 1117.1 675 83.0
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 0.0e+00 1117.1 718 79.8
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1116.3 675 82.8
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1116.3 675 82.8
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 0.0e+00 1114.0 638 85.1
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 0.0e+00 1111.3 655 83.2
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 0.0e+00 1110.5 663 83.7
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 0.0e+00 1109.0 693 81.0
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 0.0e+00 1109.0 685 81.3
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 0.0e+00 1103.6 708 78.5
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 0.0e+00 1093.6 688 80.2
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 0.0e+00 1093.2 726 76.9
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 0.0e+00 1091.3 671 82.3
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 0.0e+00 1090.9 645 81.9
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 0.0e+00 1088.2 726 77.7
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 0.0e+00 1086.6 667 80.4
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 0.0e+00 1085.9 725 77.5
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 0.0e+00 1082.4 673 82.2
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 0.0e+00 1081.6 669 83.1
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 0.0e+00 1081.2 874 66.9
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1075.1 657 82.0
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 7.5e-311 1070.1 773 73.2
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 3.4e-303 1044.6 682 78.7
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 4.2e-301 1037.7 746 74.0
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 3.8e-294 1014.6 632 79.0
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 4.2e-293 1011.1 623 82.2
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 1.4e-288 996.1 650 74.6
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 9.4e-285 983.4 624 77.1
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 2.1e-284 982.2 570 85.4
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 2.0e-271 939.1 525 89.7
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 5.9e-271 937.6 529 87.7
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 5.0e-270 934.5 602 75.2
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 5.5e-269 931.0 648 73.1
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 1.2e-268 929.9 529 88.1
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 8.8e-267 923.7 529 86.0
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 1.5e-266 922.9 532 84.4
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 1.1e-264 916.8 513 87.7
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 9.1e-264 913.7 510 88.4
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 1.4e-259 899.8 624 70.7
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 3.1e-256 888.6 605 74.9
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 3.5e-255 885.2 584 77.9
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 5.9e-247 857.8 632 67.9
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 3.0e-238 828.9 460 89.3
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 3.7e-233 812.0 454 89.4
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 1.7e-225 786.6 612 64.9
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 1.4e-219 766.9 504 77.8
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 2.0e-194 683.3 387 84.8
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 3.0e-190 669.5 410 83.2
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 9.7e-181 637.9 402 77.6
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 1.6e-180 637.1 352 87.5
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 1.2e-175 620.9 401 77.3
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 2.0e-154 550.4 352 80.4
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 3.0e-142 510.0 447 62.6
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 1.7e-129 467.6 597 42.9
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 5.4e-123 446.0 679 38.6
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 7.3e-112 409.1 371 60.1
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 3.6e-111 406.8 367 59.7
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 9.9e-109 398.7 658 38.8
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 6.2e-103 379.4 480 45.0
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 1.9e-99 367.9 228 81.6
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 1.7e-97 361.3 327 59.3
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 3.9e-81 307.0 169 89.9
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 6.3e-71 273.1 161 83.2
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 4.2e-59 233.8 162 69.1
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 6.1e-58 229.9 215 55.3
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 6.9e-54 216.5 160 75.6
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 1.5e-48 198.7 114 88.6
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 4.7e-42 177.2 197 54.8
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 8.8e-41 172.9 263 43.3
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 9.7e-40 169.5 182 48.4
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 2.2e-39 168.3 105 77.1
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 3.8e-36 157.5 106 74.5
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 2.1e-34 151.8 112 65.2
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 1.4e-33 149.1 88 84.1
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 5.2e-33 147.1 139 58.3
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 2.0e-32 145.2 95 71.6
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 3.4e-32 144.4 82 86.6
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 1.7e-31 142.1 97 78.4
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 1.4e-30 139.0 71 81.7
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 3.3e-27 127.9 96 69.8
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 9.5e-27 126.3 89 75.3
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 5.6e-19 100.5 60 73.3
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 2.6e-16 91.7 47 78.7
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 1.7e-15 89.0 143 38.5
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 6.4e-15 87.0 48 77.1
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 7.8e-13 80.1 77 59.7
SEGI_19526 Sequoiadendron giganteum HOM05D005018 ORTHO05D043556 9.2e-06 56.6 28 85.7


User provided reference genes

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