Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 1.6e-211 739.2 368 100.0
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 1.6e-139 500.0 370 71.6
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 7.9e-139 497.7 371 70.6
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 5.3e-135 485.0 372 69.6
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 7.6e-134 481.1 372 69.9
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 2.9e-133 479.2 377 68.4
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 2.4e-132 476.1 361 70.9
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 2.4e-132 476.1 390 65.9
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 5.5e-132 474.9 364 70.1
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 5.5e-132 474.9 390 65.9
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 7.1e-132 474.6 380 70.3
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 1.6e-131 473.4 369 69.4
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 2.7e-131 472.6 369 68.8
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 3.5e-131 472.2 343 72.6
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 7.9e-131 471.1 376 68.4
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 7.9e-131 471.1 362 69.9
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 2.3e-130 469.5 290 80.7
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 3.3e-129 465.7 353 70.3
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 7.4e-129 464.5 323 76.2
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 2.1e-128 463.0 369 68.3
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 6.2e-128 461.5 374 66.3
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 6.2e-128 461.5 319 74.3
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 8.2e-128 461.1 381 66.9
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 1.8e-127 459.9 361 69.8
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 1.5e-126 456.8 368 67.9
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 7.6e-126 454.5 319 73.0
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 6.5e-125 451.4 352 68.8
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 5.5e-124 448.4 374 65.0
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 7.1e-124 448.0 268 82.8
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 2.7e-123 446.0 293 78.2
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 4.6e-123 445.3 363 65.3
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 4.6e-123 445.3 321 71.7
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 6.0e-123 444.9 377 66.0
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 2.3e-122 443.0 281 78.6
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 3.9e-122 442.2 281 78.6
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 8.7e-122 441.0 307 72.6
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 8.7e-122 441.0 350 66.3
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 2.5e-121 439.5 389 62.7
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 5.7e-121 438.3 321 70.4
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 4.8e-120 435.3 296 75.7
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 6.3e-120 434.9 364 64.0
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 1.4e-119 433.7 323 69.0
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 2.4e-119 433.0 295 73.2
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 6.9e-119 431.4 269 80.7
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 1.5e-118 430.3 360 64.7
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 1.5e-118 430.3 377 62.6
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 4.5e-118 428.7 333 67.3
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 5.9e-118 428.3 325 66.5
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 3.8e-117 425.6 368 62.2
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 1.1e-116 424.1 376 63.8
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 1.1e-116 424.1 285 73.0
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 1.4e-116 423.7 280 74.6
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 1.4e-116 423.7 286 74.1
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.9e-116 423.3 328 67.4
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 5.5e-116 421.8 362 64.6
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 9.4e-116 421.0 364 63.2
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 1.2e-115 420.6 370 62.7
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 1.6e-115 420.2 325 67.7
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 2.7e-115 419.5 269 76.2
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 7.9e-115 417.9 246 82.1
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 1.0e-114 417.5 319 67.4
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 1.8e-114 416.8 375 64.0
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 3.0e-114 416.0 364 62.6
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 5.1e-114 415.2 290 74.8
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 5.1e-114 415.2 370 64.3
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 2.5e-113 412.9 320 67.5
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 3.3e-113 412.5 311 67.8
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 4.3e-113 412.1 353 63.5
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 2.8e-112 409.5 366 62.3
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 3.7e-112 409.1 291 69.8
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 8.2e-112 407.9 379 60.2
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 1.8e-111 406.8 367 62.1
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 9.1e-111 404.4 277 72.9
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 2.0e-110 403.3 384 60.9
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 7.7e-110 401.4 312 67.0
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 1.0e-109 401.0 281 70.5
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 2.2e-109 399.8 377 59.7
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 3.8e-109 399.1 373 60.1
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 5.0e-109 398.7 373 59.8
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 8.5e-109 397.9 373 60.1
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 1.4e-108 397.1 314 65.0
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 2.1e-107 393.3 300 67.0
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 2.1e-107 393.3 290 68.3
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 7.9e-107 391.3 302 66.6
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 9.7e-105 384.4 310 64.2
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 2.8e-104 382.9 388 54.9
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 3.0e-98 362.8 291 66.0
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 7.4e-97 358.2 364 57.4
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 4.1e-87 325.9 237 66.2
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 7.0e-87 325.1 278 63.3
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.2e-85 320.1 373 53.6
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 8.5e-85 318.2 278 61.9
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 1.3e-77 294.3 225 62.2
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 8.6e-77 291.6 243 57.6
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 1.5e-76 290.8 329 46.8
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 1.4e-74 284.3 285 58.6
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 5.2e-74 282.3 381 49.1
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.1e-71 274.6 236 52.1
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 2.7e-70 270.0 183 74.9
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 1.0e-69 268.1 183 74.3
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 2.1e-67 260.4 200 65.0
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 4.4e-65 252.7 240 50.4
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 3.7e-64 249.6 240 48.3
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 3.4e-57 226.5 183 63.9
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.9e-55 220.7 222 55.4
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 3.9e-53 213.0 114 83.3
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 5.8e-49 199.1 180 48.9
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 8.3e-48 195.3 120 80.0
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 4.1e-47 193.0 205 45.9
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 1.7e-45 187.6 238 38.2
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 2.0e-41 174.1 219 41.6
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 8.1e-35 152.1 148 56.1
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 7.6e-33 145.6 149 58.4
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 1.1e-31 141.7 159 54.7
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 3.2e-31 140.2 215 44.2
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 3.0e-29 133.7 75 89.3
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 4.5e-25 119.8 108 62.0
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 5.4e-23 112.8 131 55.0
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 6.2e-19 99.4 67 77.6
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 2.2e-16 90.9 243 29.2
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 3.0e-13 80.5 105 44.8
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 5.8e-09 66.2 143 30.1
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 3.8e-08 63.5 142 30.3
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 3.8e-08 63.5 156 26.9
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 4.9e-08 63.2 142 30.3
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 8.4e-08 62.4 142 30.3
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 1.1e-07 62.0 161 29.2
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 1.1e-07 62.0 153 31.4
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 1.1e-07 62.0 149 28.2
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 1.9e-07 61.2 200 25.0
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 2.5e-07 60.8 200 25.0
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 2.5e-07 60.8 142 30.3
MCO05G154 Micromonas commoda HOM05D006539 ORTHO05D044332 3.2e-07 60.5 218 23.9
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 3.2e-07 60.5 142 29.6
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 5.5e-07 59.7 201 24.4
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 5.5e-07 59.7 201 24.4
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 5.5e-07 59.7 201 24.4
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 5.5e-07 59.7 141 31.9
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 5.5e-07 59.7 142 29.6
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 7.1e-07 59.3 201 24.4
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 7.1e-07 59.3 143 32.2
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 7.1e-07 59.3 150 30.0
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 9.3e-07 58.9 200 24.0
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 9.3e-07 58.9 155 30.3
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 9.3e-07 58.9 161 29.8
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 1.2e-06 58.5 201 24.9
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 1.6e-06 58.2 201 23.4
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 1.6e-06 58.2 142 29.6
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 1.6e-06 58.2 178 24.7
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 2.1e-06 57.8 200 24.5
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 2.7e-06 57.4 200 24.5
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 2.7e-06 57.4 142 26.1
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 3.5e-06 57.0 141 30.5
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 6.1e-06 56.2 200 24.5
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 6.1e-06 56.2 151 30.5


User provided reference genes

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