Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 1.8e-72 275.8 136 100.0
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 3.5e-68 261.5 136 93.4
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 4.6e-68 261.2 136 94.1
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 4.6e-68 261.2 136 93.4
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 6.0e-68 260.8 136 92.6
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 7.8e-68 260.4 136 93.4
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 7.8e-68 260.4 136 93.4
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 7.8e-68 260.4 136 93.4
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 2.3e-67 258.8 136 93.4
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 6.6e-67 257.3 136 92.6
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 8.6e-67 256.9 136 93.4
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 1.5e-66 256.1 136 91.9
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 1.5e-66 256.1 136 91.9
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 4.3e-66 254.6 136 91.2
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 4.3e-66 254.6 136 91.2
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 5.6e-66 254.2 136 90.4
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 9.5e-66 253.4 136 91.2
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 9.5e-66 253.4 136 91.2
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 9.5e-66 253.4 136 91.2
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 9.5e-66 253.4 136 91.2
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 1.6e-65 252.7 131 93.9
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 2.1e-65 252.3 136 91.2
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.1e-65 252.3 136 89.7
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.1e-65 252.3 136 90.4
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 2.8e-65 251.9 128 94.5
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.6e-65 251.5 134 91.0
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 4.7e-65 251.1 131 92.4
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 4.7e-65 251.1 131 92.4
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 4.7e-65 251.1 131 91.6
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 6.2e-65 250.8 136 91.2
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.1e-64 250.0 136 90.4
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 1.1e-64 250.0 136 90.4
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 1.4e-64 249.6 135 89.6
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 1.8e-64 249.2 131 92.4
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 1.8e-64 249.2 130 92.3
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 1.8e-64 249.2 131 92.4
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 2.4e-64 248.8 136 88.2
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.4e-64 248.8 134 90.3
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 5.2e-64 247.7 136 88.2
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 5.2e-64 247.7 136 89.0
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 5.2e-64 247.7 131 91.6
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 6.8e-64 247.3 131 90.8
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 6.8e-64 247.3 131 90.8
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 8.9e-64 246.9 131 90.1
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.5e-63 246.1 131 90.1
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.0e-63 245.7 136 89.0
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 2.0e-63 245.7 136 89.0
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 3.4e-63 245.0 131 90.1
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 1.3e-62 243.0 131 90.1
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.3e-62 243.0 136 87.5
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.7e-62 242.7 131 88.5
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 1.7e-62 242.7 136 87.5
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 3.8e-62 241.5 136 86.8
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 6.4e-62 240.7 129 88.4
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 6.4e-62 240.7 131 87.8
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 8.4e-62 240.4 138 86.2
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 1.1e-61 240.0 131 87.0
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 1.4e-61 239.6 136 86.8
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.9e-61 239.2 136 86.0
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 1.9e-61 239.2 127 89.8
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 2.4e-61 238.8 138 85.5
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 3.2e-61 238.4 136 84.6
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 5.4e-61 237.7 131 87.8
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.4e-61 237.7 159 76.7
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 5.4e-61 237.7 136 86.0
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 5.4e-61 237.7 136 86.0
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 5.4e-61 237.7 136 85.3
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 7.1e-61 237.3 136 86.8
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 7.1e-61 237.3 136 86.8
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 9.2e-61 236.9 131 87.0
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 9.2e-61 236.9 131 87.0
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 1.2e-60 236.5 136 83.8
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.2e-60 236.5 131 87.0
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.6e-60 236.1 136 83.8
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 1.6e-60 236.1 136 85.3
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 1.6e-60 236.1 136 84.6
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 2.1e-60 235.7 136 85.3
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 2.7e-60 235.3 136 84.6
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 3.5e-60 235.0 134 85.1
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 3.5e-60 235.0 132 86.4
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 3.5e-60 235.0 137 84.7
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 4.6e-60 234.6 136 85.3
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 7.8e-60 233.8 136 82.4
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 1.0e-59 233.4 136 86.0
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 1.3e-59 233.0 136 84.6
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 1.7e-59 232.6 136 83.1
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 1.7e-59 232.6 136 83.1
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 1.7e-59 232.6 136 83.1
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 1.7e-59 232.6 136 82.4
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 3.9e-59 231.5 136 82.4
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 8.7e-59 230.3 131 85.5
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 1.1e-58 229.9 136 83.8
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 1.6e-57 226.1 128 83.6
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 6.2e-57 224.2 125 86.4
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 6.2e-57 224.2 136 79.4
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.8e-56 222.6 168 70.2
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 5.2e-56 221.1 168 69.6
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 9.0e-56 220.3 136 78.7
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 2.6e-55 218.8 184 63.6
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 9.9e-55 216.9 136 77.2
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 4.9e-54 214.5 136 75.7
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 2.1e-52 209.1 136 73.5
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 4.6e-52 208.0 136 79.4
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 7.8e-52 207.2 137 79.6
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.3e-51 205.7 136 70.6
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 3.9e-51 204.9 200 56.0
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 2.5e-50 202.2 131 75.6
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.0e-48 194.9 136 76.5
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.5e-47 193.0 134 65.7
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 2.0e-47 192.6 131 66.4
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 2.2e-46 189.1 133 69.2
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 2.2e-46 189.1 102 86.3
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 1.4e-45 186.4 123 69.1
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 2.1e-44 182.6 127 74.0
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 1.5e-42 176.4 134 62.7
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.9e-42 176.0 144 67.4
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 4.8e-41 171.4 121 70.2
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 2.6e-39 165.6 93 89.2
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.4e-39 165.2 97 82.5
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 5.8e-39 164.5 86 93.0
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.9e-37 159.5 85 90.6
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 5.5e-37 157.9 79 91.1
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 1.2e-36 156.8 86 88.4
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 1.3e-35 153.3 135 64.4
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 3.9e-35 151.8 86 84.9
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.1e-35 151.4 80 85.0
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.1e-34 150.2 92 80.4
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 1.9e-34 149.4 87 85.1
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 4.3e-34 148.3 87 83.9
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 4.3e-34 148.3 87 83.9
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.6e-34 147.9 90 81.1
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.3e-33 146.7 80 83.8
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 1.8e-32 142.9 105 72.4
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.4e-31 138.7 75 85.3
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 3.4e-31 138.7 71 88.7
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.7e-30 136.3 85 81.2
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.2e-29 132.1 89 76.4
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 7.1e-29 131.0 68 86.8
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 2.2e-25 119.4 65 83.1
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.3e-22 110.2 91 59.3
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 4.6e-20 101.7 91 59.3
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.5e-18 96.7 81 55.6
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 1.1e-16 90.5 46 87.0
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 2.0e-15 86.3 45 82.2
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 5.0e-14 81.6 56 75.0
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 2.0e-10 69.7 41 75.6
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 7.4e-10 67.8 57 61.4
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 5.3e-08 61.6 42 71.4


User provided reference genes

Program Settings