Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G173566 Manihot esculenta HOM05D065945 ORTHO05D004692 3.7e-114 414.8 203 100.0
Manes.07G091450 Manihot esculenta HOM05D065945 ORTHO05D004692 2.3e-47 193.0 116 83.6
TWI09G1536 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 5.3e-12 75.5 144 38.2
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 6.9e-12 75.1 57 59.6
TWI31G1174 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.3e-10 70.9 58 55.2
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 1.4e-09 67.4 83 45.8
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 1.9e-09 67.0 77 48.1
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 1.9e-09 67.0 77 48.1
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 2.5e-09 66.6 79 46.8
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 3.2e-09 66.2 83 44.6
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 3.2e-09 66.2 87 44.8
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 5.5e-09 65.5 77 46.8
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 7.2e-09 65.1 62 48.4
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 9.4e-09 64.7 66 50.0
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 1.2e-08 64.3 118 39.8
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.2e-08 64.3 70 47.1
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.2e-08 64.3 70 47.1
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.2e-08 64.3 70 47.1
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 1.2e-08 64.3 76 46.1
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 1.6e-08 63.9 63 50.8
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 2.1e-08 63.5 55 52.7
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 2.7e-08 63.2 55 49.1
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 2.7e-08 63.2 108 38.9
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 2.7e-08 63.2 52 55.8
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 3.6e-08 62.8 77 45.5
Actinidia37202 Actinidia chinensis HOM05D004190 ORTHO05D004692 4.7e-08 62.4 93 37.6
CSS0017255 Camellia sinensis var. sinensis HOM05D004190 ORTHO05D004692 4.7e-08 62.4 110 38.2
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 4.7e-08 62.4 161 28.0
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 4.7e-08 62.4 47 59.6
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 6.1e-08 62.0 77 44.2
PSO339G5001 Papaver somniferum HOM05D066734 ORTHO05D004692 7.9e-08 61.6 82 43.9
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 1.0e-07 61.2 77 42.9
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 1.0e-07 61.2 124 32.3
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.0e-07 61.2 63 44.4
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.0e-07 61.2 63 44.4
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.0e-07 61.2 63 44.4
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 1.0e-07 61.2 50 62.0
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 1.4e-07 60.8 77 48.1
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 1.4e-07 60.8 77 48.1
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 1.4e-07 60.8 77 48.1
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 1.4e-07 60.8 150 31.3
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 1.4e-07 60.8 85 38.8
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.4e-07 60.8 74 45.9
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 1.8e-07 60.5 56 53.6
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 1.8e-07 60.5 63 46.0
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 1.8e-07 60.5 50 56.0
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.8e-07 60.5 83 42.2
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 1.8e-07 60.5 90 42.2
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.8e-07 60.5 61 47.5
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 2.3e-07 60.1 53 54.7
PSO384G2347 Papaver somniferum HOM05D066734 ORTHO05D004692 2.3e-07 60.1 68 45.6
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 2.3e-07 60.1 57 50.9
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 3.0e-07 59.7 66 47.0
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 3.0e-07 59.7 58 50.0
Phvul.002G155600 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 3.0e-07 59.7 54 46.3
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 3.0e-07 59.7 57 50.9
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 3.9e-07 59.3 71 45.1
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 3.9e-07 59.3 77 48.1
PSO384G5141 Papaver somniferum HOM05D066660 ORTHO05D004692 3.9e-07 59.3 50 52.0
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 5.1e-07 58.9 49 53.1
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 5.1e-07 58.9 59 44.1
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 5.1e-07 58.9 102 35.3
Aqoxy4G00226 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 6.7e-07 58.5 65 44.6
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 6.7e-07 58.5 77 45.5
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 6.7e-07 58.5 53 52.8
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 6.7e-07 58.5 53 52.8
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 6.7e-07 58.5 53 52.8
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 6.7e-07 58.5 53 52.8
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 6.7e-07 58.5 86 38.4
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 6.7e-07 58.5 144 34.0
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 6.7e-07 58.5 93 38.7
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 6.7e-07 58.5 49 53.1
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 6.7e-07 58.5 93 37.6
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 6.7e-07 58.5 54 46.3
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 8.8e-07 58.2 55 52.7
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 8.8e-07 58.2 72 44.4
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 8.8e-07 58.2 140 30.0
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 8.8e-07 58.2 59 50.8
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 1.1e-06 57.8 107 33.6
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 1.1e-06 57.8 95 34.7
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 1.1e-06 57.8 67 41.8
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.1e-06 57.8 150 29.3
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 1.1e-06 57.8 148 32.4
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 1.1e-06 57.8 157 31.8
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 1.5e-06 57.4 52 44.2
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.5e-06 57.4 67 46.3
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 1.5e-06 57.4 54 50.0
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 1.5e-06 57.4 75 41.3
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 1.5e-06 57.4 88 37.5
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.5e-06 57.4 72 43.1
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 2.0e-06 57.0 72 41.7
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 2.0e-06 57.0 54 53.7
unitig_8.g3659 Utricularia gibba HOM05D004190 ORTHO05D004692 2.0e-06 57.0 56 44.6
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 2.6e-06 56.6 46 56.5
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.6e-06 56.6 53 50.9
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.6e-06 56.6 53 50.9
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.6e-06 56.6 46 56.5
Gorai.001G110900 Gossypium raimondii HOM05D004190 ORTHO05D004692 2.6e-06 56.6 47 57.4
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 2.6e-06 56.6 47 46.8
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 2.6e-06 56.6 138 29.0
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 2.6e-06 56.6 91 37.4
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 2.6e-06 56.6 137 31.4
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 2.6e-06 56.6 54 50.0
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 3.3e-06 56.2 96 35.4
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 3.3e-06 56.2 153 28.1
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 3.3e-06 56.2 130 31.5
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 4.4e-06 55.8 58 50.0
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 5.7e-06 55.5 80 40.0
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 5.7e-06 55.5 130 31.5
Gohir.D07G103000 Gossypium hirsutum HOM05D004190 ORTHO05D004692 7.4e-06 55.1 47 55.3
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 9.7e-06 54.7 116 29.3
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 9.7e-06 54.7 72 40.3
GSVIVG01024953001 Vitis vinifera HOM05D004190 ORTHO05D004692 9.7e-06 54.7 108 34.3


User provided reference genes

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