Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 0.0e+00 1984.5 1003 100.0
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 3.2e-203 713.0 1057 45.1
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 1.3e-180 637.9 1074 40.7
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 6.6e-164 582.4 949 41.6
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 2.1e-138 497.7 1077 36.9
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 4.8e-138 496.5 1081 36.7
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 1.7e-135 488.0 1057 35.7
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 2.2e-135 487.6 1066 34.8
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 4.9e-135 486.5 1044 34.8
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 4.3e-131 473.4 1099 34.7
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 3.1e-129 467.2 1050 34.9
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 2.6e-128 464.2 1052 34.4
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 4.2e-126 456.8 1101 34.1
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 2.7e-125 454.1 1120 33.9
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.7e-125 454.1 1065 34.6
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 2.7e-125 454.1 1081 34.1
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 1.6e-122 444.9 1094 34.5
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 6.9e-121 439.5 1104 33.6
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 9.0e-121 439.1 975 37.1
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 1.5e-120 438.3 1106 33.5
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 3.9e-116 423.7 1090 32.8
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 3.9e-116 423.7 1141 31.9
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 6.7e-116 422.9 1106 33.7
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.5e-115 421.8 1167 32.5
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 2.8e-114 417.5 1099 33.1
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 6.3e-114 416.4 1099 33.1
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.6e-112 411.0 1109 32.1
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 5.0e-111 406.8 1107 32.7
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 6.5e-111 406.4 1056 34.1
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 1.5e-107 395.2 1080 31.9
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 2.6e-107 394.4 1063 32.3
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 3.5e-104 384.0 1091 31.9
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 1.0e-103 382.5 1070 32.4
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 2.2e-103 381.3 1039 32.4
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 5.0e-103 380.2 1096 31.6
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.5e-102 378.6 1060 31.3
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 1.9e-102 378.3 1074 31.1
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 2.0e-99 368.2 1050 32.1
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 3.3e-99 367.5 1108 32.7
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 3.3e-99 367.5 1041 31.7
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 9.1e-97 359.4 1074 30.7
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 1.6e-96 358.6 1071 31.6
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.0e-96 358.2 1016 33.7
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 2.0e-96 358.2 1032 32.2
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 4.5e-96 357.1 1164 29.2
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 2.2e-95 354.8 1087 29.9
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 2.2e-95 354.8 1104 30.0
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 5.5e-94 350.1 1179 28.6
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 9.4e-94 349.4 1077 30.1
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 9.4e-94 349.4 1081 30.8
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 3.6e-93 347.4 1180 29.0
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 1.4e-92 345.5 1055 30.3
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.3e-92 344.7 1097 30.2
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 4.0e-92 344.0 1058 31.0
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 1.5e-91 342.0 1094 30.4
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 2.2e-90 338.2 1100 29.9
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 2.2e-90 338.2 1025 31.6
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 2.4e-89 334.7 1092 29.6
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 3.1e-89 334.3 1012 31.0
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 5.9e-88 330.1 1088 29.2
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 2.9e-87 327.8 1137 28.9
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 3.8e-87 327.4 1100 29.5
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 8.5e-87 326.2 1055 30.2
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 5.5e-86 323.6 1136 28.8
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.2e-85 322.4 1048 30.2
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 4.0e-84 317.4 1035 30.1
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 1.2e-83 315.8 1035 30.4
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 9.8e-83 312.8 815 32.8
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 6.3e-82 310.1 1082 30.1
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 5.4e-81 307.0 998 30.3
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 5.0e-79 300.4 1013 30.4
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.3e-78 297.7 862 31.2
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 7.2e-78 296.6 1173 28.5
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 9.5e-78 296.2 1035 27.4
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 2.3e-76 291.6 575 37.7
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 2.3e-76 291.6 1015 27.4
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 1.5e-75 288.9 1043 29.6
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 1.3e-74 285.8 1041 28.0
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 9.2e-73 279.6 1012 28.9
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 5.9e-72 276.9 865 30.6
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 2.9e-71 274.6 669 36.3
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 5.0e-71 273.9 1082 26.7
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.9e-70 271.9 1033 28.4
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 1.2e-69 269.2 717 31.5
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 2.6e-67 261.5 825 30.3
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 5.4e-65 253.8 1046 27.9
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 1.2e-64 252.7 804 28.7
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 1.2e-64 252.7 755 30.2
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 1.2e-64 252.7 1092 28.2
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 1.6e-64 252.3 755 30.2
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 7.8e-64 250.0 754 29.8
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 1.3e-63 249.2 696 33.5
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 1.7e-63 248.8 810 28.5
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 1.1e-62 246.1 647 31.4
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 1.9e-62 245.4 805 29.3
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 7.1e-57 226.9 680 30.7
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 6.0e-48 197.2 386 34.7
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 8.6e-47 193.4 318 38.4
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 5.6e-46 190.7 474 31.6
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 2.9e-42 178.3 1108 22.8
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 7.1e-41 173.7 187 50.3
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.6e-37 161.4 479 30.3
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 4.8e-37 161.0 727 26.3
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 1.8e-36 159.1 699 27.3
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.2e-35 156.4 165 51.5
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 1.5e-35 156.0 453 30.5
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 1.9e-33 149.1 633 25.3
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 7.1e-33 147.1 134 57.5
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 7.9e-32 143.7 523 29.8
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 7.9e-32 143.7 167 47.3
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 1.9e-30 139.0 682 24.5
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.5e-30 138.7 373 33.8
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 4.3e-30 137.9 1005 24.3
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 1.6e-29 136.0 112 61.6
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 3.6e-29 134.8 135 51.9
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 4.8e-29 134.4 514 29.0
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 4.0e-28 131.3 204 42.6
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 2.2e-26 125.6 207 39.6
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 1.9e-25 122.5 129 48.8
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 2.4e-25 122.1 657 26.6
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 4.2e-25 121.3 181 40.9
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.1e-24 119.0 177 39.5
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 3.3e-22 111.7 724 26.0
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 8.1e-21 107.1 324 28.7
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 1.8e-20 105.9 966 23.5
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 1.5e-19 102.8 129 45.0
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 2.9e-18 98.6 742 25.3
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 6.5e-18 97.4 307 28.0
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.9e-17 95.9 756 23.0
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 3.2e-17 95.1 333 27.0
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 6.7e-15 87.4 66 63.6
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 2.5e-14 85.5 92 44.6
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 5.7e-14 84.3 719 24.3
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 1.6e-13 82.8 739 24.5
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 8.2e-13 80.5 207 35.7
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.1e-09 70.1 443 26.4
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 1.4e-09 69.7 496 26.4
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 1.4e-09 69.7 59 52.5
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 3.5e-08 65.1 73 54.8
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 4.6e-08 64.7 99 40.4
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 3.0e-07 62.0 449 24.1
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.9e-06 59.3 56 51.8
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 2.5e-06 58.9 56 51.8


User provided reference genes

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