Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 2.1e-249 865.9 718 100.0
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 9.9e-146 521.5 711 78.6
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 8.1e-140 501.9 705 72.8
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 2.0e-138 497.3 713 71.4
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 2.2e-116 424.1 671 74.1
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 1.7e-113 414.5 730 70.3
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 6.5e-113 412.5 716 69.1
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 4.2e-112 409.8 721 70.5
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 7.2e-112 409.1 718 70.6
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 2.7e-111 407.1 619 78.5
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 4.7e-111 406.4 619 78.4
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 1.0e-110 405.2 673 69.1
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 2.3e-110 404.1 670 73.4
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 5.1e-110 402.9 708 70.8
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 3.7e-108 396.7 627 77.2
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 6.3e-108 396.0 679 72.6
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 1.1e-107 395.2 623 77.5
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 1.1e-107 395.2 633 75.2
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 5.3e-107 392.9 701 70.5
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.2e-106 391.7 617 68.4
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 2.0e-106 391.0 682 72.3
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 5.9e-106 389.4 664 72.0
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 5.9e-106 389.4 624 76.6
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 5.9e-106 389.4 690 71.0
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 1.3e-105 388.3 665 72.5
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 3.8e-105 386.7 658 72.3
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 3.6e-103 380.2 703 70.0
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 1.4e-102 378.3 696 69.3
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 3.9e-102 376.7 693 71.4
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 5.2e-102 376.3 713 68.4
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 6.7e-102 375.9 688 69.3
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 6.7e-102 375.9 707 69.6
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.1e-101 375.2 690 69.1
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 1.1e-101 375.2 717 66.0
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 5.7e-101 372.9 622 74.9
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.7e-100 371.3 626 73.8
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 6.3e-100 369.4 730 67.0
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 1.1e-99 368.6 619 74.5
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 2.4e-99 367.5 726 68.2
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 5.9e-98 362.8 632 69.5
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 7.7e-98 362.5 631 75.6
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 1.3e-97 361.7 666 72.2
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 2.5e-96 357.5 671 70.3
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 6.1e-95 352.8 722 67.0
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 6.1e-95 352.8 667 69.7
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 8.0e-95 352.4 685 66.3
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.0e-94 352.1 722 67.2
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 1.4e-94 351.7 659 70.6
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 2.3e-94 350.9 697 69.4
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 4.0e-94 350.1 454 69.2
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 2.0e-93 347.8 723 67.2
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 2.0e-93 347.8 671 68.9
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 2.6e-93 347.4 675 71.0
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 3.3e-93 347.1 709 68.7
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 4.4e-93 346.7 679 67.7
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 5.7e-93 346.3 551 81.1
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 7.5e-93 345.9 676 68.5
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 1.3e-92 345.1 721 66.0
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 2.2e-92 344.4 601 74.4
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 3.7e-92 343.6 694 67.6
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 8.2e-92 342.4 726 65.4
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 8.2e-92 342.4 420 71.9
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 1.4e-91 341.7 666 71.2
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 3.1e-91 340.5 710 65.4
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 3.1e-91 340.5 592 74.5
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 7.0e-91 339.3 715 65.5
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 7.0e-91 339.3 630 71.9
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 1.6e-90 338.2 638 71.2
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 5.0e-89 333.2 591 74.5
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 1.5e-88 331.6 712 61.5
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 4.2e-88 330.1 730 65.5
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 5.5e-88 329.7 706 65.9
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 2.1e-87 327.8 672 69.2
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 4.7e-87 326.6 627 66.5
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 8.0e-87 325.9 665 56.8
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 5.2e-86 323.2 706 61.6
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 3.4e-85 320.5 708 61.6
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 5.7e-85 319.7 719 61.2
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 2.2e-84 317.8 285 57.5
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 4.8e-84 316.6 707 61.2
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 4.8e-84 316.6 631 70.5
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 6.3e-84 316.2 620 71.8
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 1.4e-83 315.1 704 66.6
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 1.1e-80 305.4 679 67.6
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 2.5e-80 304.3 728 60.4
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 9.5e-80 302.4 576 70.0
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.0e-78 298.9 379 47.2
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 1.8e-78 298.1 619 70.8
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 8.9e-78 295.8 408 66.9
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 2.0e-77 294.7 734 63.1
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 4.4e-77 293.5 361 46.5
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 1.4e-75 288.5 506 81.4
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 5.9e-74 283.1 356 47.5
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 4.7e-71 273.5 317 47.9
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 1.4e-70 271.9 705 64.4
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 9.5e-64 249.2 401 64.8
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 1.1e-59 235.7 497 80.5
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 4.4e-53 213.8 354 61.0
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 2.2e-52 211.5 505 75.6
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 3.2e-51 207.6 553 68.0
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 4.0e-46 190.7 506 74.9
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 7.8e-34 149.8 239 82.0
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 9.6e-32 142.9 122 56.6
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 3.5e-26 124.4 241 31.1
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 2.3e-25 121.7 79 75.9
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 6.7e-25 120.2 79 75.9
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 6.9e-22 110.2 298 26.5
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 3.4e-21 107.8 75 74.7
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 9.9e-21 106.3 222 29.7
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 3.8e-20 104.4 67 80.6
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 8.4e-20 103.2 180 37.8
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 8.4e-20 103.2 76 67.1
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 1.6e-18 99.0 431 77.7
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 7.9e-10 70.1 60 66.7
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 8.7e-09 66.6 96 42.7
Ah.16g100720 Amaranthus hybridus HOM05D004783 ORTHO05D005581 4.3e-08 64.3 173 30.1
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 7.4e-08 63.5 173 23.7
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 2.2e-07 62.0 48 62.5
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 4.8e-07 60.8 173 22.0
CARHR109480 Cardamine hirsuta HOM05D003056 ORTHO05D003422 1.4e-06 59.3 168 23.2
Sabra06G0127800 Salix brachista HOM05D003056 ORTHO05D003422 1.4e-06 59.3 165 24.2
Potri.006G166200 Populus trichocarpa HOM05D003056 ORTHO05D003422 2.4e-06 58.5 165 24.2
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 3.1e-06 58.2 336 23.5
SpUn0483_0010 Schrenkiella parvula HOM05D003056 ORTHO05D003422 3.1e-06 58.2 161 23.0
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 4.1e-06 57.8 167 25.1
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 5.3e-06 57.4 158 22.2
Carub.0003s3317 Capsella rubella HOM05D003056 ORTHO05D003422 5.3e-06 57.4 180 23.3
Atru.chr7.865 Acer truncatum HOM05D003056 ORTHO05D003422 6.9e-06 57.0 167 23.4
CANSAT11G0661 Cannabis sativa HOM05D003056 ORTHO05D003422 9.0e-06 56.6 169 23.1


User provided reference genes

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