Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 5053.8 2573 100.0
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 3306.5 2575 66.6
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 3285.4 2630 65.2
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 3209.9 2577 65.5
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 2802.3 2562 60.8
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 2688.3 2313 63.5
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 2641.3 2747 54.2
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2465.6 2612 52.1
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2450.6 2620 51.6
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 2391.3 2595 50.9
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 2294.6 2565 49.6
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 2266.9 2582 49.0
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 2263.4 2583 49.0
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2232.2 2612 49.0
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2229.9 2606 48.4
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 2218.7 2698 48.0
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 2176.4 2632 47.3
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2166.7 2605 47.9
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 2102.0 2589 48.2
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2073.5 2590 46.8
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 2063.1 2609 46.1
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 2055.8 2602 45.9
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 2053.1 2674 45.4
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2040.8 2654 45.3
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 2040.0 2601 44.8
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 2028.1 2624 45.1
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 2010.7 2597 44.2
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 2008.4 2615 44.5
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 1998.4 2608 45.2
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1988.4 2666 44.7
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1964.5 2609 44.3
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1919.4 2383 46.6
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1913.3 2599 43.2
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1912.5 2614 43.7
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1868.2 2608 42.6
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1867.4 2586 42.0
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1852.8 2581 43.0
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1844.7 2592 41.4
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1833.2 2600 41.7
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1828.1 2625 41.3
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1827.0 2545 43.7
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1816.2 2228 46.7
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1813.5 2606 41.8
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1812.7 2612 42.0
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1807.0 2602 41.1
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1790.0 2661 41.6
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1790.0 2266 45.7
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1788.5 2590 41.5
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1785.0 2583 41.9
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1782.3 2583 42.1
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1781.5 2586 41.9
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1776.5 2604 41.1
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1776.1 2668 41.5
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1770.4 2536 43.0
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1769.6 2603 41.1
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1762.7 2612 40.5
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1758.0 2580 41.6
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1756.1 2607 41.0
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1736.9 2655 41.2
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1734.9 2627 41.1
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1723.4 2601 40.8
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1720.3 2653 40.9
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1715.7 2672 40.3
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1707.2 2576 40.4
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1698.7 2625 40.8
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1697.9 2627 39.9
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1647.5 2004 45.7
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1624.0 2622 39.6
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1619.0 2544 40.1
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1616.3 2576 39.3
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1585.9 2642 38.6
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1550.4 2590 38.5
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1545.8 2037 45.2
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1536.2 2684 38.2
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1511.1 2646 37.1
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1486.1 2635 37.8
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1483.4 2466 38.4
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1478.4 2632 37.3
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1474.9 2576 37.1
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1469.9 2668 37.3
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1466.4 2666 36.8
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1434.5 2140 41.1
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1418.7 2544 36.8
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1414.8 1783 46.3
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1401.7 2603 36.3
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1349.0 2359 37.2
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1344.3 1708 45.5
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1337.8 2594 35.6
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1326.6 2598 35.1
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1295.8 2020 38.1
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1259.6 2593 35.0
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1252.3 2207 36.7
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1230.3 1734 41.7
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 1193.7 1796 42.1
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1114.4 2216 34.5
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1106.3 2112 36.0
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 8.1e-299 1031.9 2488 31.9
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.5e-276 957.2 909 55.1
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 3.8e-240 837.0 782 59.0
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 7.0e-210 736.5 2739 26.4
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.6e-209 735.3 809 48.7
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 5.6e-207 726.9 2710 26.3
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 6.4e-195 686.8 2565 26.4
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 1.4e-186 659.1 2569 26.5
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 9.9e-180 636.3 2735 26.0
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 6.4e-179 633.6 1152 36.5
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.4e-173 615.1 607 57.7
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 2.2e-163 582.0 613 55.1
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.8e-157 562.4 1249 33.0
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 9.3e-154 550.1 1134 35.0
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 2.0e-143 515.8 553 50.5
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 4.1e-141 508.1 1130 33.9
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 2.2e-139 502.3 763 42.3
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 1.3e-134 486.5 607 47.6
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.4e-130 473.0 734 41.7
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.2e-130 471.9 906 35.0
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.3e-123 449.9 398 58.3
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 1.9e-122 446.0 511 45.6
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 4.2e-122 444.9 660 44.1
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.2e-102 379.4 484 43.2
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.5e-98 365.9 721 36.2
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.7e-83 316.6 925 29.9
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 3.3e-82 312.4 342 52.9
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 4.6e-76 292.0 324 54.0
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.9e-75 288.9 485 40.8
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 7.1e-69 268.1 395 43.8
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 2.6e-55 223.0 177 59.9
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 4.2e-53 215.7 421 34.7
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 4.3e-50 205.7 339 36.3
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.3e-49 204.1 355 37.2
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 1.5e-47 197.2 181 63.5
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 1.0e-46 194.5 234 47.0
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 1.1e-45 191.0 219 47.5
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 4.8e-41 175.6 334 35.9
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.6e-39 169.9 181 51.4
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 4.5e-39 169.1 326 35.0
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 3.9e-35 156.0 356 32.9
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 5.7e-34 152.1 490 27.8
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 2.2e-33 150.2 151 49.0
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 1.0e-30 141.4 204 40.2
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 3.8e-30 139.4 147 49.0
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 1.6e-28 134.0 122 55.7
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 2.8e-25 123.2 203 40.4
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 4.1e-24 119.4 343 28.3
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 1.2e-23 117.9 209 38.8
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 1.2e-20 107.8 368 24.7
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 6.7e-19 102.1 119 42.0
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 1.1e-18 101.3 166 35.5
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 2.6e-18 100.1 79 58.2
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 1.3e-17 97.8 64 68.8
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.3e-17 97.8 131 45.0
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 8.2e-17 95.1 244 29.1
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 1.8e-16 94.0 150 38.7
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 1.5e-15 90.9 325 26.5
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 1.5e-15 90.9 325 26.5
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 2.0e-15 90.5 350 24.0
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 1.7e-14 87.4 126 44.4
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.6e-12 79.7 161 32.3
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 4.7e-12 79.3 134 31.3
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.0e-11 76.6 428 22.9
SEGI_30448 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.7e-09 70.9 223 27.4
Atru.chr2.3366 Acer truncatum HOM05D003876 ORTHO05D004560 3.7e-09 69.7 64 53.1
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 6.3e-09 68.9 76 52.6
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 1.1e-08 68.2 112 36.6
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 7.0e-08 65.5 64 40.6
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 4.5e-07 62.8 87 47.1
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 1.7e-06 60.8 51 56.9
SEGI_13878 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.2e-06 60.5 149 28.9


User provided reference genes

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