Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7999 Avicennia marina HOM05D005515 ORTHO05D006620 1.7e-39 166.0 112 100.0
Oeu041666.1 Olea europaea HOM05D005515 ORTHO05D006620 2.7e-26 122.1 110 77.3
Dinv10962 Davidia involucrata HOM05D000504 ORTHO05D006620 5.2e-25 117.9 110 75.5
Cc11_g16850 Coffea canephora HOM05D005515 ORTHO05D006620 8.8e-25 117.1 111 76.6
Zm00001eb364510 Zea mays HOM05D005515 ORTHO05D006620 1.7e-23 112.8 109 55.0
TAR622G0361 Trochodendron aralioides HOM05D005515 ORTHO05D006620 2.8e-23 112.1 110 71.8
CsaV3_6G032220 Cucumis sativus L. HOM05D005515 ORTHO05D006620 4.8e-23 111.3 110 66.4
Aqoxy5G03385 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 1.1e-22 110.2 110 70.0
TAR374G0204 Trochodendron aralioides HOM05D005515 ORTHO05D006620 1.4e-22 109.8 108 71.3
Dinv25661 Davidia involucrata HOM05D005515 ORTHO05D006620 1.8e-22 109.4 110 59.1
Lsat_1_v5_gn_8_147620 Lactuca sativa HOM05D005515 ORTHO05D006620 1.8e-22 109.4 111 72.1
arahy.Tifrunner.gnm1.ann1.W7YL8X Arachis hypogaea HOM05D005515 ORTHO05D006620 3.1e-22 108.6 112 73.2
arahy.Tifrunner.gnm1.ann1.Y4DWZG Arachis hypogaea HOM05D005515 ORTHO05D006620 3.1e-22 108.6 112 73.2
GSVIVG01033096001 Vitis vinifera HOM05D005515 ORTHO05D006620 4.1e-22 108.2 110 65.5
Aqoxy7G00951 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 5.3e-22 107.8 109 69.7
Aqoxy2G02223 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 1.6e-21 106.3 109 68.8
Haze_14873 Corylus avellana HOM05D005515 ORTHO05D006620 1.6e-21 106.3 110 54.5
SEGI_35944 Sequoiadendron giganteum HOM05D005515 ORTHO05D006620 1.6e-21 106.3 110 67.3
CANSAT11G1216 Cannabis sativa HOM05D005515 ORTHO05D006620 2.0e-21 105.9 110 60.9
Migut.K00729 Erythranthe guttata HOM05D005515 ORTHO05D006620 2.0e-21 105.9 111 54.1
Gohir.A05G338800 Gossypium hirsutum HOM05D005515 ORTHO05D006620 2.0e-21 105.9 110 66.4
Mapoly0005s0063 Marchantia polymorpha HOM05D005515 ORTHO05D006620 2.0e-21 105.9 110 65.5
PGR102G1194 Punica granatum HOM05D005515 ORTHO05D006620 2.6e-21 105.5 111 73.0
HPP92_000347 Vanilla planifolia HOM05D005515 ORTHO05D006620 2.6e-21 105.5 109 67.0
CiPaw.04G036400 Carya illinoinensis HOM05D005515 ORTHO05D006620 3.5e-21 105.1 110 49.1
Eucgr.I01648 Eucalyptus grandis HOM05D005515 ORTHO05D006620 3.5e-21 105.1 108 66.7
Hund04339 Selenicereus undatus HOM05D005515 ORTHO05D006620 4.5e-21 104.8 110 67.3
Sc07g0003980 Simmondsia chinensis HOM05D005515 ORTHO05D006620 4.5e-21 104.8 110 66.4
Atru.chr6.2567 Acer truncatum HOM05D005515 ORTHO05D006620 5.9e-21 104.4 107 70.1
Pp3c4_1860 Physcomitrium patens HOM05D005515 ORTHO05D006620 5.9e-21 104.4 106 68.9
Gohir.D07G235400 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.3e-20 103.2 110 68.2
Lj1g0017105 Lotus japonicus HOM05D005515 ORTHO05D006620 1.3e-20 103.2 110 65.5
PSO063G5856 Papaver somniferum HOM05D005515 ORTHO05D006620 1.3e-20 103.2 110 68.2
PSO782G3173 Papaver somniferum HOM05D005515 ORTHO05D006620 1.3e-20 103.2 110 67.3
Zm00001eb143260 Zea mays HOM05D005515 ORTHO05D006620 1.3e-20 103.2 109 50.5
Gohir.D04G077100 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.7e-20 102.8 110 69.1
Pp3c8_2660 Physcomitrium patens HOM05D005515 ORTHO05D006620 1.7e-20 102.8 110 50.0
Rhsim10G0006500 Rhododendron simsii HOM05D005515 ORTHO05D006620 1.7e-20 102.8 109 64.2
Sed0013471 Sechium edule HOM05D005515 ORTHO05D006620 1.7e-20 102.8 109 52.3
FvH4_6g53480 Fragaria vesca HOM05D005515 ORTHO05D006620 2.2e-20 102.4 110 57.3
Pp3c12_14240 Physcomitrium patens HOM05D005515 ORTHO05D006620 2.2e-20 102.4 108 63.0
EL10Ac6g15358 Beta vulgaris HOM05D005515 ORTHO05D006620 2.9e-20 102.1 110 51.8
Ciclev10017250m.g Citrus clementina HOM05D005515 ORTHO05D006620 2.9e-20 102.1 110 64.5
Nitab4.5_0003376g0030 Nicotiana tabacum HOM05D005515 ORTHO05D006620 2.9e-20 102.1 108 69.4
Nitab4.5_0008640g0020 Nicotiana tabacum HOM05D005515 ORTHO05D006620 2.9e-20 102.1 108 69.4
FAN09G0415 Fragaria x ananassa HOM05D005515 ORTHO05D006620 3.8e-20 101.7 109 62.4
Prupe.3G305900 Prunus persica HOM05D005515 ORTHO05D006620 3.8e-20 101.7 110 64.5
Solyc02g068110.4 Solanum lycopersicum HOM05D005515 ORTHO05D006620 3.8e-20 101.7 108 68.5
Atru.chr11.2315 Acer truncatum HOM05D005515 ORTHO05D006620 5.0e-20 101.3 108 70.4
FAN05G2195 Fragaria x ananassa HOM05D005515 ORTHO05D006620 5.0e-20 101.3 109 62.4
Lalb_Chr22g0360381 Lupinus albus HOM05D005515 ORTHO05D006620 5.0e-20 101.3 110 65.5
Os01g0920200 Oryza sativa ssp. japonica HOM05D005515 ORTHO05D006620 5.0e-20 101.3 110 62.7
TWI36G0725 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 6.5e-20 100.9 112 68.8
unitig_8.g2909 Utricularia gibba HOM05D005515 ORTHO05D006620 8.5e-20 100.5 109 72.5
Potri.017G069200 Populus trichocarpa HOM05D005515 ORTHO05D006620 1.1e-19 100.1 114 63.2
Thecc.04G035700 Theobroma cacao HOM05D005515 ORTHO05D006620 1.1e-19 100.1 110 68.2
MD09G1011100 Malus domestica HOM05D005515 ORTHO05D006620 1.5e-19 99.8 107 56.1
Phvul.001G093800 Phaseolus vulgaris HOM05D005515 ORTHO05D006620 1.5e-19 99.8 111 64.0
Duzib147G1212 Durio zibethinus HOM05D005515 ORTHO05D006620 1.9e-19 99.4 110 66.4
Gorai.012G087000 Gossypium raimondii HOM05D005515 ORTHO05D006620 1.9e-19 99.4 109 67.9
CSS0007323 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 2.5e-19 99.0 112 48.2
Peaxi162Scf00881g00228 Petunia axillaris HOM05D005515 ORTHO05D006620 2.5e-19 99.0 105 70.5
FAN02G1022 Fragaria x ananassa HOM05D005515 ORTHO05D006620 3.2e-19 98.6 110 60.0
Gorai.001G271200 Gossypium raimondii HOM05D005515 ORTHO05D006620 3.2e-19 98.6 110 66.4
Glyma.16G056700 Glycine max HOM05D005515 ORTHO05D006620 4.2e-19 98.2 110 63.6
Manes.12G012000 Manihot esculenta HOM05D005515 ORTHO05D006620 5.5e-19 97.8 110 70.0
AUR62017824 Chenopodium quinoa HOM05D005515 ORTHO05D006620 1.2e-18 96.7 106 50.9
Glyma.19G091000 Glycine max HOM05D005515 ORTHO05D006620 1.2e-18 96.7 110 61.8
Gohir.A07G228200 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.6e-18 96.3 110 65.5
Manes.15G160700 Manihot esculenta HOM05D005515 ORTHO05D006620 1.6e-18 96.3 110 63.6
Medtr7g033490 Medicago truncatula HOM05D005515 ORTHO05D006620 1.6e-18 96.3 109 48.6
Potri.001G330400 Populus trichocarpa HOM05D005515 ORTHO05D006620 1.6e-18 96.3 111 56.8
Migut.K01462 Erythranthe guttata HOM05D005515 ORTHO05D006620 2.1e-18 95.9 110 64.5
CAN.G1300.5 Capsicum annuum HOM05D005515 ORTHO05D006620 2.7e-18 95.5 107 66.4
Duzib187G1157 Durio zibethinus HOM05D005515 ORTHO05D006620 3.6e-18 95.1 110 63.6
Duzib268G1731 Durio zibethinus HOM05D005515 ORTHO05D006620 3.6e-18 95.1 115 50.4
THA.LOC104823981 Tarenaya hassleriana HOM05D005515 ORTHO05D006620 3.6e-18 95.1 115 67.8
Psat3g175680 Pisum sativum HOM05D005515 ORTHO05D006620 4.7e-18 94.7 110 47.3
TPR.G38294 Trifolium pratense HOM05D005515 ORTHO05D006620 4.7e-18 94.7 110 47.3
Gorai.009G332600 Gossypium raimondii HOM05D005515 ORTHO05D006620 6.1e-18 94.4 112 50.9
Duzib264G0697 Durio zibethinus HOM05D005515 ORTHO05D006620 1.4e-17 93.2 110 62.7
MSTRG.15568 Avicennia marina HOM05D005515 ORTHO05D006620 2.3e-17 92.4 113 67.3
Gohir.A05G310700 Gossypium hirsutum HOM05D005515 ORTHO05D006620 2.3e-17 92.4 90 56.7
Cfa009365 Carpinus fangiana HOM05D000048 ORTHO05D000445 8.8e-17 90.5 106 67.0
ATR1098G146 Amborella trichopoda HOM05D005515 ORTHO05D006620 2.6e-16 89.0 121 58.7
CARHR148320 Cardamine hirsuta HOM05D005515 ORTHO05D006620 4.4e-16 88.2 114 57.9
SMO367G0376 Selaginella moellendorffii HOM05D005515 ORTHO05D006620 4.4e-16 88.2 108 59.3
AL5G16230 Arabidopsis lyrata HOM05D005515 ORTHO05D006620 9.7e-16 87.0 113 61.1
MELO3C011459.2 Cucumis melo HOM05D005515 ORTHO05D006620 6.3e-15 84.3 81 69.1
Actinidia05921 Actinidia chinensis HOM05D005515 ORTHO05D006620 1.1e-14 83.6 112 43.8
MD00G1139400 Malus domestica HOM05D005515 ORTHO05D006620 2.4e-14 82.4 80 56.2
Cpa.g.sc43.50 Carica papaya HOM05D005515 ORTHO05D006620 9.1e-14 80.5 88 75.0
Haze_12412 Corylus avellana HOM05D000048 ORTHO05D000445 1.6e-13 79.7 110 44.5
PGSC0003DMG401006926 Solanum tuberosum HOM05D005515 ORTHO05D006620 1.3e-12 76.6 84 71.4
Nn3g16471 Nelumbo nucifera HOM05D005515 ORTHO05D006620 1.7e-12 76.3 88 70.5
SalBow2G3427 Salvia bowleyana HOM05D005515 ORTHO05D006620 1.7e-12 76.3 85 51.8
Actinidia36201 Actinidia chinensis HOM05D005515 ORTHO05D006620 2.2e-12 75.9 86 61.6
Ciclev10033394m.g Citrus clementina HOM05D005515 ORTHO05D006620 2.2e-12 75.9 87 71.3
HanXRQChr12g0385431 Helianthus annuus HOM05D005515 ORTHO05D006620 6.5e-12 74.3 47 76.6
vmacro05955 Vaccinium macrocarpon HOM05D005515 ORTHO05D006620 1.1e-11 73.6 49 71.4
Carub.0005s0534 Capsella rubella HOM05D005515 ORTHO05D006620 1.5e-11 73.2 115 59.1
AagrBONN_evm.TU.Sc2ySwM_117.47 Anthoceros agrestis HOM05D005515 ORTHO05D006620 2.5e-11 72.4 84 47.6
FAN14G0031 Fragaria x ananassa HOM05D005515 ORTHO05D006620 2.5e-11 72.4 87 54.0
Sp2g16230 Schrenkiella parvula HOM05D005515 ORTHO05D006620 3.2e-11 72.0 112 58.9
Thhalv10005161m.g Eutrema salsugineum HOM05D005515 ORTHO05D006620 5.5e-11 71.2 114 57.0
QL02p071462 Quercus lobata HOM05D005515 ORTHO05D006620 5.5e-11 71.2 47 72.3
RcHm_v2.0_Chr2g0175521 Rosa chinensis HOM05D005515 ORTHO05D006620 5.5e-11 71.2 47 72.3
Sopen02g017220 Solanum pennellii HOM05D005515 ORTHO05D006620 5.5e-11 71.2 84 44.0
Ah.02g120510 Amaranthus hybridus HOM05D005515 ORTHO05D006620 7.2e-11 70.9 72 51.4
A09p03280 Brassica napus HOM05D005515 ORTHO05D006620 7.2e-11 70.9 114 59.6
CSS0037273 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 1.6e-10 69.7 49 67.3
CDE02G3365 Ceratophyllum demersum HOM05D005515 ORTHO05D006620 2.1e-10 69.3 83 73.5
BcaC04g23917 Brassica carinata HOM05D005515 ORTHO05D006620 2.7e-10 68.9 113 60.2
BolC9t53269H Brassica oleracea HOM05D005515 ORTHO05D006620 2.7e-10 68.9 113 60.2
Sabra16G0211700 Salix brachista HOM05D005515 ORTHO05D006620 2.7e-10 68.9 47 68.1
AT3G27100 Arabidopsis thaliana HOM05D005515 ORTHO05D006620 3.6e-10 68.6 115 58.3
VMungo1383G1573 Vigna mungo HOM05D005515 ORTHO05D006620 6.1e-10 67.8 45 71.1
BolC7t44132H Brassica oleracea HOM05D005515 ORTHO05D006620 2.3e-09 65.9 108 47.2
SGA_v2.0_scaffold154G37170 Striga asiatica HOM05D005515 ORTHO05D006620 2.3e-09 65.9 107 61.7
BraA06t27074Z Brassica rapa HOM05D005515 ORTHO05D006620 2.0e-08 62.8 88 64.8
MCO13G114 Micromonas commoda HOM05D005515 ORTHO05D006620 2.0e-08 62.8 87 64.4
C09p03480 Brassica napus HOM05D005515 ORTHO05D006620 3.4e-08 62.0 86 41.9
Sabra17G0064300 Salix brachista HOM05D005515 ORTHO05D006620 5.7e-08 61.2 104 39.4
Gohir.D05G311500 Gossypium hirsutum HOM05D005515 ORTHO05D006620 7.5e-08 60.8 89 43.8
Aa31LG2G5500 Aethionema arabicum HOM05D005515 ORTHO05D006620 9.8e-08 60.5 113 54.0
C07p36160 Brassica napus HOM05D005515 ORTHO05D006620 1.1e-06 57.0 95 61.1
COL.COLO4_20393 Corchorus olitorius HOM05D005515 ORTHO05D006620 5.4e-06 54.7 57 50.9
SalBow7G1491 Salvia bowleyana HOM05D005515 ORTHO05D006620 7.0e-06 54.3 111 37.8


User provided reference genes

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