Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 0.0e+00 1196.4 751 100.0
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 2.2e-220 769.6 758 68.3
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 3.4e-213 745.7 753 69.2
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 4.4e-197 692.2 762 60.9
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 2.5e-171 606.7 754 60.1
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 7.1e-171 605.1 762 61.7
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 3.0e-169 599.7 760 61.6
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 1.5e-168 597.4 772 56.5
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 1.4e-163 580.9 746 58.4
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 2.1e-162 577.0 763 57.5
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 3.0e-161 573.2 772 57.3
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 9.7e-160 568.2 768 55.5
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 1.5e-157 560.8 778 56.3
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 2.2e-156 557.0 752 55.6
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 4.6e-154 549.3 768 54.4
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 6.7e-153 545.4 768 53.5
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 1.3e-151 541.2 775 54.6
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.4e-150 537.7 779 51.6
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 1.2e-149 534.6 767 53.8
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 5.9e-149 532.3 768 53.8
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 4.2e-147 526.2 751 49.7
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 1.2e-146 524.6 769 54.7
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 1.0e-145 521.5 770 52.9
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 1.4e-145 521.2 768 54.7
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 2.3e-145 520.4 764 55.0
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 5.1e-145 519.2 770 54.8
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 1.7e-143 514.2 777 53.0
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 2.4e-142 510.4 725 56.0
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 3.1e-142 510.0 773 52.4
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 3.5e-141 506.5 775 53.9
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 5.9e-141 505.8 765 52.3
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 8.5e-140 501.9 798 49.0
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 1.1e-139 501.5 772 53.0
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 1.5e-139 501.1 758 53.6
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 1.6e-138 497.7 772 50.8
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 8.0e-138 495.4 752 53.6
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.0e-137 495.0 769 53.4
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 5.2e-137 492.7 798 50.5
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 1.5e-136 491.1 759 47.3
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.3e-136 490.0 768 50.7
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 3.3e-136 490.0 765 52.4
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 7.5e-136 488.8 765 52.0
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 3.7e-135 486.5 766 46.7
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.1e-134 485.0 774 49.9
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 1.1e-134 485.0 762 53.5
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 1.4e-134 484.6 752 52.1
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.8e-134 484.2 770 49.9
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 2.4e-134 483.8 779 51.7
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 1.2e-133 481.5 769 51.5
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.2e-133 481.5 763 52.2
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 4.5e-133 479.6 768 50.1
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 7.7e-133 478.8 768 51.8
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 1.0e-132 478.4 697 56.1
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 1.3e-132 478.0 761 51.9
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 5.0e-132 476.1 792 50.5
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 8.5e-132 475.3 766 53.1
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 3.2e-131 473.4 767 52.5
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 4.2e-131 473.0 764 53.5
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 4.2e-131 473.0 735 50.6
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 9.4e-131 471.9 789 51.0
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 1.6e-130 471.1 779 52.6
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 3.6e-130 469.9 770 49.6
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.8e-129 467.6 769 49.8
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 1.8e-129 467.6 777 51.2
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 1.8e-129 467.6 763 50.1
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 1.8e-129 467.6 766 49.7
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 5.2e-129 466.1 742 50.0
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 1.2e-128 464.9 768 53.8
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 2.0e-128 464.2 768 50.9
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 2.6e-128 463.8 740 49.9
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 2.2e-127 460.7 774 53.7
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 4.8e-127 459.5 764 49.1
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 1.4e-126 458.0 759 50.3
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 2.7e-125 453.8 777 51.6
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 4.5e-125 453.0 766 49.1
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 5.9e-125 452.6 826 49.6
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 7.7e-125 452.2 764 52.0
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 1.0e-124 451.8 766 51.0
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 1.3e-124 451.4 768 50.1
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 3.8e-124 449.9 767 51.5
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 3.2e-123 446.8 776 48.6
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 1.4e-121 441.4 771 48.1
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 1.2e-120 438.3 781 52.0
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 2.6e-120 437.2 780 54.5
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 9.8e-120 435.3 757 49.4
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 1.8e-118 431.0 771 50.5
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 4.1e-118 429.9 788 48.2
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 1.2e-117 428.3 763 47.7
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 2.3e-116 424.1 774 50.1
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 5.0e-116 422.9 766 48.0
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 1.9e-115 421.0 765 45.1
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 7.3e-115 419.1 767 46.3
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 1.0e-113 415.2 775 49.0
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 1.8e-113 414.5 740 45.4
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 2.0e-112 411.0 770 46.0
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 5.7e-112 409.5 743 49.1
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 1.3e-111 408.3 767 49.0
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 1.3e-111 408.3 683 51.0
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 3.7e-111 406.8 761 48.0
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 4.9e-111 406.4 773 48.6
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 8.3e-111 405.6 739 47.9
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 1.4e-110 404.8 774 45.7
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 3.2e-110 403.7 768 43.6
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 2.0e-109 401.0 773 45.1
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 2.0e-109 401.0 775 45.2
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 2.7e-109 400.6 772 45.3
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 1.1e-107 395.2 751 44.6
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 1.1e-107 395.2 751 44.6
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 1.1e-107 395.2 751 44.6
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 7.3e-107 392.5 770 45.7
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 9.5e-107 392.1 764 47.0
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 2.3e-105 387.5 765 47.3
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 8.9e-97 359.0 279 71.0
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.4e-94 351.7 709 40.8
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 1.6e-93 348.2 763 44.4
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 1.8e-89 334.7 764 42.8
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 4.0e-89 333.6 325 62.2
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 4.6e-85 320.1 713 49.4
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 7.8e-85 319.3 759 42.4
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 2.1e-82 311.2 803 42.2
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 7.6e-80 302.8 826 41.6
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 4.2e-78 297.0 806 40.2
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 9.0e-73 279.3 577 44.4
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.1e-59 235.7 539 45.6
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 3.1e-57 227.6 757 36.9
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 3.4e-56 224.2 257 54.5
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.0e-55 222.6 257 54.1
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 8.7e-52 209.5 215 55.3
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 1.1e-43 182.6 222 51.4
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 1.5e-40 172.2 197 53.3
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 2.6e-40 171.4 258 46.5
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-39 169.5 299 40.1
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 3.9e-36 157.5 296 46.6
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 4.4e-35 154.1 168 56.0
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 9.7e-27 126.3 71 90.1
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 7.7e-24 116.7 112 55.4
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 1.3e-23 115.9 72 80.6
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 9.1e-17 93.2 114 49.1
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 3.2e-14 84.7 130 42.3
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 3.4e-11 74.7 106 37.7
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 5.7e-11 73.9 109 44.0
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 5.7e-11 73.9 144 32.6
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 7.5e-11 73.6 108 44.4
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 9.8e-11 73.2 100 40.0
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.0e-08 65.5 83 50.6
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 6.5e-07 60.5 129 38.0
ECA247G0578 Erigeron canadensis HOM05D004873 ORTHO05D006122 1.5e-06 59.3 85 49.4
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 1.9e-06 58.9 745 24.7


User provided reference genes

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