Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 2.5e-127 458.8 225 100.0
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 6.2e-94 347.8 225 76.0
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 9.5e-87 323.9 222 73.9
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 1.8e-85 319.7 219 72.6
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 4.4e-76 288.5 200 73.5
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 4.4e-76 288.5 200 73.5
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 6.0e-73 278.1 205 69.3
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 1.7e-72 276.6 222 64.9
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 3.9e-72 275.4 156 82.7
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 6.6e-72 274.6 194 72.2
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 6.6e-72 274.6 160 81.9
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 1.9e-71 273.1 156 81.4
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 5.6e-71 271.6 163 79.1
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 5.6e-71 271.6 156 80.8
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 1.2e-70 270.4 155 82.6
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 1.6e-70 270.0 156 81.4
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 2.8e-70 269.2 220 64.1
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 3.6e-70 268.9 159 79.9
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 6.2e-70 268.1 159 79.2
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 6.2e-70 268.1 197 68.5
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 8.1e-70 267.7 188 69.7
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 1.1e-69 267.3 156 81.4
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 1.4e-69 266.9 184 71.7
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 1.4e-69 266.9 163 77.3
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 1.4e-69 266.9 163 77.3
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.8e-69 266.5 160 80.6
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 1.8e-69 266.5 159 79.9
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 5.2e-69 265.0 158 81.0
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 6.8e-69 264.6 158 81.0
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 1.2e-68 263.8 161 80.7
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 1.5e-68 263.5 159 78.0
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 2.0e-68 263.1 159 78.0
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 2.6e-68 262.7 159 78.0
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 2.6e-68 262.7 192 69.3
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.6e-68 262.7 159 79.2
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 3.4e-68 262.3 155 78.7
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 4.4e-68 261.9 187 68.4
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 4.4e-68 261.9 168 76.8
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 5.8e-68 261.5 159 78.0
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 5.8e-68 261.5 160 76.2
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 5.8e-68 261.5 156 78.2
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 9.9e-68 260.8 201 66.2
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 1.3e-67 260.4 158 79.1
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 1.7e-67 260.0 220 60.5
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 4.9e-67 258.5 155 78.7
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 4.9e-67 258.5 160 77.5
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 6.4e-67 258.1 153 79.7
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 8.4e-67 257.7 155 77.4
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 8.4e-67 257.7 159 76.7
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 8.4e-67 257.7 159 76.1
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.1e-66 257.3 177 71.8
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.1e-66 257.3 159 75.5
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 1.4e-66 256.9 159 77.4
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 1.4e-66 256.9 159 76.1
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 1.4e-66 256.9 158 76.6
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 1.9e-66 256.5 159 74.8
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.9e-66 256.5 159 74.8
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.9e-66 256.5 159 74.8
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 4.2e-66 255.4 159 74.8
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 7.1e-66 254.6 166 74.7
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 7.1e-66 254.6 155 78.1
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 9.3e-66 254.2 156 76.9
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 1.2e-65 253.8 161 77.6
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 1.2e-65 253.8 206 63.1
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 1.6e-65 253.4 189 65.6
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 1.6e-65 253.4 163 74.8
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 2.1e-65 253.1 156 75.6
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 2.7e-65 252.7 194 64.4
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 3.5e-65 252.3 224 57.6
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 3.5e-65 252.3 159 74.8
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 7.8e-65 251.1 151 76.8
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 7.8e-65 251.1 159 74.8
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 7.8e-65 251.1 220 59.1
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.0e-64 250.8 159 73.6
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 3.0e-64 249.2 217 59.9
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 3.9e-64 248.8 169 71.6
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 8.7e-64 247.7 159 71.7
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 8.7e-64 247.7 159 71.7
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 8.7e-64 247.7 159 71.7
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 8.7e-64 247.7 160 73.1
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 1.1e-63 247.3 198 65.2
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 1.5e-63 246.9 192 64.6
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 1.5e-63 246.9 160 76.2
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 1.9e-63 246.5 159 71.1
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 7.3e-63 244.6 156 73.7
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 9.6e-63 244.2 178 69.7
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 1.3e-62 243.8 159 71.1
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 1.6e-62 243.4 155 74.2
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 1.6e-62 243.4 202 59.4
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 4.8e-62 241.9 159 70.4
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 6.2e-62 241.5 159 70.4
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 8.1e-62 241.1 159 69.8
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 1.4e-61 240.4 153 77.1
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 1.8e-61 240.0 202 61.4
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 2.0e-60 236.5 155 75.5
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 2.9e-59 232.6 196 61.2
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 2.9e-59 232.6 174 66.1
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 1.4e-58 230.3 151 70.2
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 1.4e-58 230.3 211 58.3
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 5.4e-58 228.4 157 69.4
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 1.2e-57 227.3 184 60.3
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 5.6e-55 218.4 158 70.3
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 1.6e-54 216.9 208 53.4
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 3.6e-54 215.7 160 63.1
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 6.2e-54 214.9 129 81.4
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 4.9e-51 205.3 163 63.2
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 4.6e-49 198.7 164 56.7
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 7.9e-49 198.0 122 78.7
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 6.2e-46 188.3 181 57.5
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 1.5e-44 183.7 143 57.3
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 4.5e-44 182.2 156 60.3
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 4.9e-43 178.7 144 63.2
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 6.3e-38 161.8 160 53.8
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 6.9e-37 158.3 87 83.9
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 7.9e-33 144.8 138 57.2
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 7.9e-33 144.8 138 57.2
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.9e-27 126.3 85 74.1
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 3.6e-25 119.4 143 43.4
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 4.3e-23 112.5 119 44.5
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 7.4e-23 111.7 84 66.7
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 2.2e-22 110.2 73 69.9
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 2.8e-22 109.8 116 43.1
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 3.4e-20 102.8 126 42.9
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 7.4e-15 85.1 82 53.7
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.0e-11 74.7 83 54.2
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 1.0e-11 74.7 38 84.2
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 1.6e-09 67.4 45 68.9
Zm00001eb317050 Zea mays HOM05D006308 ORTHO05D007820 2.6e-07 60.1 72 47.2
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 6.3e-06 55.5 140 27.1
arahy.Tifrunner.gnm1.ann1.QG9RQP Arachis hypogaea HOM05D030826 ORTHO05D023738 8.2e-06 55.1 42 59.5


User provided reference genes

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