Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 4.3e-172 607.8 290 100.0
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 5.4e-127 458.0 303 72.9
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.3e-117 426.8 237 78.5
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 2.5e-116 422.5 236 78.8
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 4.3e-116 421.8 272 72.4
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 1.3e-115 420.2 300 68.3
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 1.6e-115 419.9 303 66.0
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 1.6e-115 419.9 303 66.0
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 1.6e-115 419.9 303 66.0
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 8.1e-115 417.5 269 72.5
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.4e-114 416.8 247 75.7
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.4e-114 416.8 247 75.7
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 1.8e-114 416.4 286 68.5
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 1.8e-114 416.4 302 66.2
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.0e-113 412.9 293 68.3
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 2.6e-113 412.5 237 76.8
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 3.4e-113 412.1 286 68.2
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 1.3e-112 410.2 240 77.1
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 4.9e-112 408.3 267 70.4
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 6.5e-112 407.9 232 76.7
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 2.5e-111 406.0 232 75.4
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 4.2e-111 405.2 261 70.1
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 1.2e-110 403.7 303 64.4
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 1.6e-110 403.3 292 65.8
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 2.1e-110 402.9 232 75.0
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 2.7e-110 402.5 270 70.7
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 3.5e-110 402.1 298 62.8
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 1.8e-109 399.8 236 74.2
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 2.3e-109 399.4 234 73.5
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 3.9e-109 398.7 244 70.9
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 3.9e-109 398.7 298 64.4
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 5.1e-109 398.3 261 69.3
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 5.1e-109 398.3 236 74.2
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 5.1e-109 398.3 236 73.7
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 5.1e-109 398.3 240 72.5
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 6.7e-109 397.9 296 65.2
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 4.3e-108 395.2 233 75.1
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 5.7e-108 394.8 260 69.2
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 9.6e-108 394.0 236 71.2
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 1.6e-107 393.3 236 71.2
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 1.6e-107 393.3 236 71.2
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 1.6e-107 393.3 264 70.5
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 2.8e-107 392.5 287 62.7
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 2.8e-107 392.5 301 62.5
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 6.3e-107 391.3 236 72.9
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 2.4e-106 389.4 279 62.4
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 3.1e-106 389.0 281 63.3
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 6.9e-106 387.9 230 74.3
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 9.0e-106 387.5 251 71.3
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 9.0e-106 387.5 236 71.6
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 1.5e-105 386.7 233 72.1
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 2.0e-105 386.3 236 70.8
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 4.5e-105 385.2 269 64.7
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 4.5e-105 385.2 241 69.7
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 4.5e-105 385.2 236 72.0
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 4.5e-105 385.2 237 71.7
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 7.6e-105 384.4 233 71.7
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 3.8e-104 382.1 229 74.2
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 3.8e-104 382.1 288 60.8
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 3.8e-104 382.1 233 72.1
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 6.5e-104 381.3 237 70.0
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 8.5e-104 380.9 237 70.0
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 1.1e-103 380.6 234 70.1
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 1.1e-103 380.6 301 61.1
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 1.4e-103 380.2 237 69.6
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.4e-103 380.2 270 63.0
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 2.5e-103 379.4 277 62.5
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 3.2e-103 379.0 277 63.5
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 4.2e-103 378.6 260 65.8
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 4.2e-103 378.6 241 68.9
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 4.2e-103 378.6 287 63.4
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 7.2e-103 377.9 237 68.4
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 9.3e-103 377.5 237 67.9
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 1.2e-102 377.1 237 69.6
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 1.2e-102 377.1 236 70.8
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 1.6e-102 376.7 234 68.8
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 2.1e-102 376.3 298 59.7
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 2.1e-102 376.3 234 73.1
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 2.7e-102 375.9 277 61.7
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 1.3e-101 373.6 237 67.5
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 1.3e-101 373.6 237 67.5
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 1.3e-101 373.6 237 67.5
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 5.1e-101 371.7 220 75.0
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 1.1e-100 370.5 236 68.6
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 1.5e-100 370.2 264 63.6
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 4.3e-100 368.6 280 61.4
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 7.4e-100 367.9 227 70.5
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 2.2e-99 366.3 233 69.1
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 3.7e-99 365.5 230 69.6
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 6.3e-99 364.8 291 58.4
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 2.4e-98 362.8 302 55.6
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 3.1e-98 362.5 226 73.0
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 4.1e-98 362.1 226 69.9
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 5.3e-98 361.7 256 63.7
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 9.0e-98 360.9 239 66.1
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 3.4e-97 359.0 288 58.3
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 7.7e-97 357.8 240 65.8
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 7.7e-97 357.8 241 67.2
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.3e-96 357.1 241 64.3
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 1.1e-95 354.0 239 66.5
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 2.5e-95 352.8 229 65.5
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 1.6e-94 350.1 232 65.9
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.0e-93 347.4 238 61.8
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 1.4e-93 347.1 237 62.9
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 1.1e-92 344.0 274 57.3
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 1.5e-92 343.6 232 64.7
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 2.0e-92 343.2 227 68.3
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 4.4e-92 342.0 241 60.6
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 7.4e-92 341.3 261 57.5
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 2.8e-91 339.3 230 64.8
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 4.1e-90 335.5 199 75.9
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.5e-89 333.6 231 61.0
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 7.7e-89 331.3 211 71.1
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 7.7e-89 331.3 227 61.7
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.2e-88 329.7 227 63.0
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 5.0e-88 328.6 273 54.9
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 8.5e-88 327.8 232 59.9
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 8.5e-88 327.8 225 63.6
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 1.9e-87 326.6 244 59.4
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 2.5e-87 326.2 238 58.0
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 3.2e-87 325.9 238 58.0
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 4.2e-87 325.5 262 57.3
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 5.5e-87 325.1 226 62.4
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 1.2e-86 323.9 238 57.6
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.4e-85 320.5 238 58.8
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 6.7e-85 318.2 222 61.3
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 2.0e-84 316.6 280 52.1
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 1.3e-83 313.9 225 61.8
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 2.2e-83 313.2 229 60.7
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 2.2e-83 313.2 199 71.4
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 9.1e-82 307.8 253 54.9
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 5.9e-81 305.1 229 59.8
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 2.9e-80 302.8 229 59.8
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 2.9e-80 302.8 229 59.8
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 2.9e-80 302.8 229 59.8
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 8.5e-80 301.2 229 59.4
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 4.2e-79 298.9 229 59.0
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 3.6e-78 295.8 226 59.7
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 2.2e-75 286.6 234 55.6
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 2.8e-75 286.2 176 71.0
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 6.3e-75 285.0 236 56.4
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 4.2e-71 272.3 158 75.3
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 2.1e-70 270.0 281 48.8
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.7e-70 269.6 242 57.9
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 1.8e-69 266.9 238 52.5
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 4.0e-69 265.8 226 54.0
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 5.2e-69 265.4 229 51.1
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 5.2e-69 265.4 276 49.3
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 6.8e-69 265.0 199 60.3
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 2.8e-67 259.6 219 53.4
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 6.3e-67 258.5 230 51.3
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.1e-66 257.7 216 57.9
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 7.0e-66 255.0 288 47.2
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 1.7e-64 250.4 232 50.9
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 2.5e-63 246.5 217 52.1
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 2.1e-62 243.4 228 47.4
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 1.0e-61 241.1 223 48.9
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.5e-60 237.3 173 65.3
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 6.3e-59 231.9 237 46.0
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 4.1e-58 229.2 227 47.6
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 2.3e-56 223.4 154 62.3
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 8.6e-56 221.5 259 46.3
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 3.3e-55 219.5 194 52.1
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 7.5e-52 208.4 133 71.4
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 4.9e-51 205.7 194 50.5
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 2.4e-50 203.4 130 67.7
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 2.3e-48 196.8 220 42.7
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 7.3e-47 191.8 240 42.5
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 9.5e-47 191.4 152 56.6
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 3.1e-45 186.4 321 34.3
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 3.9e-40 169.5 109 67.9
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.0e-36 157.1 96 65.6
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 3.5e-33 146.4 87 73.6
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 1.7e-27 127.5 92 59.8
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 7.8e-17 92.0 74 52.7
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 2.5e-15 87.0 49 73.5
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 1.7e-11 74.3 95 42.1
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 3.3e-07 60.1 41 61.0


User provided reference genes

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