Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 1.1e-170 603.2 307 100.0
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 2.7e-140 502.3 291 86.6
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 8.0e-137 490.7 286 84.6
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 1.0e-136 490.3 286 85.0
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 2.3e-136 489.2 286 84.3
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 2.3e-136 489.2 286 84.3
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 5.2e-136 488.0 286 85.3
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 5.2e-136 488.0 286 85.0
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 1.2e-135 486.9 272 87.1
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 2.6e-135 485.7 286 85.3
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 5.7e-135 484.6 286 85.0
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 5.7e-135 484.6 272 87.1
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.7e-134 483.0 286 82.9
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 1.7e-134 483.0 286 81.8
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 2.9e-134 482.3 301 82.7
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 3.7e-134 481.9 273 85.7
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 4.9e-134 481.5 272 85.7
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 3.2e-133 478.8 272 85.7
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 5.4e-133 478.0 290 84.1
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 5.4e-133 478.0 273 86.1
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 7.0e-133 477.6 272 85.3
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 7.0e-133 477.6 286 82.2
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 7.0e-133 477.6 288 83.0
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 9.2e-133 477.2 295 81.0
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 1.2e-132 476.9 288 82.3
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.2e-132 476.9 297 82.8
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.2e-132 476.9 286 82.2
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 2.0e-132 476.1 289 83.7
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 2.0e-132 476.1 272 84.9
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 5.9e-132 474.6 290 83.4
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 7.8e-132 474.2 286 81.5
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.0e-131 473.8 295 80.7
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.0e-131 473.8 274 84.7
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 3.9e-131 471.9 272 84.9
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 5.0e-131 471.5 295 80.3
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 6.6e-131 471.1 290 84.5
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 8.6e-131 470.7 272 83.8
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 8.6e-131 470.7 286 83.2
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.1e-130 470.3 287 80.8
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 2.5e-130 469.2 272 83.5
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 5.6e-130 468.0 272 83.1
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 5.6e-130 468.0 297 81.1
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 1.2e-129 466.8 292 81.2
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 1.6e-129 466.5 329 72.9
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 2.1e-129 466.1 297 80.1
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.8e-129 465.7 273 84.2
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 2.8e-129 465.7 310 78.4
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 6.2e-129 464.5 286 81.8
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 6.2e-129 464.5 286 80.1
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 8.0e-129 464.2 272 84.6
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.0e-128 463.8 286 80.1
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.4e-128 463.4 316 77.2
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.8e-128 463.0 271 82.7
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 2.3e-128 462.6 273 82.1
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 8.9e-128 460.7 286 80.1
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 8.9e-128 460.7 287 80.1
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.5e-127 459.9 321 75.7
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 2.6e-127 459.1 286 81.1
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 4.4e-127 458.4 273 81.0
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 7.5e-127 457.6 267 83.5
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 1.7e-126 456.4 306 75.5
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 2.2e-126 456.1 296 79.4
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 3.7e-126 455.3 285 77.9
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 3.7e-126 455.3 289 79.2
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 8.3e-126 454.1 288 78.1
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 8.3e-126 454.1 285 77.5
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 1.1e-125 453.8 272 80.5
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 1.1e-125 453.8 272 80.5
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 1.1e-125 453.8 292 79.5
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 1.9e-125 453.0 292 76.4
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 2.7e-124 449.1 299 81.3
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 4.6e-124 448.4 274 81.0
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 6.0e-124 448.0 295 79.7
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 1.0e-123 447.2 291 77.7
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 1.0e-123 447.2 272 80.9
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 1.7e-123 446.4 288 77.4
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 2.3e-123 446.0 272 78.3
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 3.0e-123 445.7 290 79.0
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 3.9e-123 445.3 286 78.3
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 3.9e-123 445.3 281 81.1
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 6.6e-123 444.5 290 77.6
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 6.6e-123 444.5 290 77.6
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 8.6e-123 444.1 288 75.3
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 1.5e-122 443.4 258 82.9
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 1.5e-122 443.4 290 78.3
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 1.5e-122 443.4 309 75.7
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 2.5e-122 442.6 295 76.6
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 2.5e-122 442.6 291 77.3
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 4.3e-122 441.8 272 78.3
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 7.3e-122 441.0 296 74.3
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 9.5e-122 440.7 272 79.4
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 1.2e-121 440.3 323 74.0
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 2.8e-121 439.1 291 79.7
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 2.3e-120 436.0 272 78.3
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 2.3e-120 436.0 296 75.7
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 9.8e-119 430.6 293 76.1
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 9.8e-119 430.6 293 76.1
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 9.8e-119 430.6 286 76.6
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.7e-118 429.9 287 73.5
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 2.9e-118 429.1 275 77.1
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 6.4e-118 427.9 308 69.8
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 8.3e-118 427.6 275 76.7
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 1.1e-117 427.2 275 76.0
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 7.1e-117 424.5 333 69.1
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.7e-116 422.5 278 74.1
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.8e-112 409.8 286 71.0
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 2.3e-107 392.9 233 82.4
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 1.8e-104 383.3 222 82.9
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.4e-104 382.9 263 71.5
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 1.7e-102 376.7 224 80.8
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 1.4e-101 373.6 240 77.1
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 1.1e-98 364.0 290 68.6
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 4.3e-98 362.1 290 69.0
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 7.3e-98 361.3 292 68.5
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 1.1e-96 357.5 272 69.1
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.1e-93 344.7 253 68.8
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 9.6e-90 334.3 204 80.9
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 8.1e-89 331.3 226 76.1
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 5.3e-88 328.6 278 60.4
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.6e-87 324.7 264 64.4
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 9.9e-87 324.3 280 60.4
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 6.4e-86 321.6 279 60.9
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 3.2e-85 319.3 190 82.1
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 7.1e-85 318.2 296 58.4
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 1.5e-82 310.5 267 61.8
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 4.3e-82 308.9 189 79.9
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 5.8e-79 298.5 180 81.1
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.1e-77 291.6 202 69.3
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 1.8e-75 287.0 262 58.4
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 8.2e-73 278.1 180 77.2
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 5.0e-70 268.9 189 72.0
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 9.7e-66 254.6 245 60.4
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 6.7e-59 231.9 146 80.1
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 4.1e-48 196.1 110 89.1
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 5.3e-48 195.7 118 78.8
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.2e-47 194.5 110 81.8
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 1.0e-43 181.4 115 78.3
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 7.5e-42 175.3 109 77.1
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 1.1e-40 171.4 118 73.7
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 2.0e-39 167.2 137 70.1
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.0e-38 164.9 264 37.5
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 3.0e-35 153.3 95 84.2
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 6.8e-35 152.1 94 79.8
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 1.5e-34 151.0 100 74.0
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 1.6e-31 141.0 266 33.5
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 3.8e-30 136.3 104 71.2
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 7.2e-29 132.1 232 39.7
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 2.1e-28 130.6 250 33.2
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 6.1e-28 129.0 258 32.2
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 5.2e-27 125.9 66 90.9
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 1.2e-26 124.8 186 43.0
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 1.5e-26 124.4 186 41.9
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 2.6e-26 123.6 118 59.3
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 2.6e-26 123.6 118 59.3
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 5.7e-26 122.5 105 64.8
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 5.7e-26 122.5 180 42.8
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 4.9e-25 119.4 118 58.5
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 5.4e-24 115.9 118 57.6
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 1.6e-23 114.4 118 56.8
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 1.4e-19 101.3 155 38.7
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 2.3e-19 100.5 155 39.4
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 2.6e-18 97.1 155 38.7
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 3.7e-17 93.2 145 40.0
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.8e-16 90.9 59 78.0
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 8.6e-14 82.0 46 76.1
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 3.6e-12 76.6 43 83.7
TWI34G1190 Tripterygium wilfordii HOM05D004147 ORTHO05D414039 4.4e-10 69.7 251 28.7


User provided reference genes

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