Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 2.7e-169 598.6 306 100.0
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 7.5e-119 431.0 301 75.1
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 6.0e-108 394.8 288 70.8
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 1.0e-107 394.0 288 70.8
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 7.3e-106 387.9 309 66.7
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 1.4e-96 357.1 302 62.3
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 9.9e-95 350.9 303 62.4
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 1.7e-94 350.1 299 61.9
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 5.4e-93 345.1 309 58.6
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 9.2e-93 344.4 309 59.2
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 2.1e-92 343.2 309 58.6
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 5.1e-91 338.6 299 59.5
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 6.2e-89 331.6 300 57.7
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 6.2e-89 331.6 313 58.1
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 6.9e-88 328.2 302 57.9
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 1.5e-87 327.0 306 57.5
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 2.6e-87 326.2 301 57.8
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 3.4e-87 325.9 289 62.3
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 1.7e-86 323.6 299 58.5
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 2.2e-86 323.2 302 58.9
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.3e-83 313.9 307 55.0
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 2.3e-83 313.2 298 56.0
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 5.1e-83 312.0 298 55.7
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 1.1e-82 310.8 231 66.2
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 4.3e-82 308.9 301 57.8
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 5.6e-82 308.5 298 55.7
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 6.2e-81 305.1 308 57.5
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 1.1e-80 304.3 298 56.7
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 1.8e-80 303.5 305 55.4
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 2.4e-80 303.1 303 56.1
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 4.0e-80 302.4 313 55.6
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 2.2e-78 296.6 302 53.0
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 4.9e-78 295.4 313 54.0
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 1.1e-77 294.3 311 53.4
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 1.1e-77 294.3 302 52.6
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 3.2e-77 292.7 233 62.2
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 7.1e-77 291.6 311 53.1
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 1.6e-76 290.4 301 52.5
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 1.6e-76 290.4 302 54.3
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 3.5e-76 289.3 310 53.2
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 6.0e-76 288.5 315 52.4
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 7.9e-76 288.1 304 54.3
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 1.3e-75 287.3 301 53.8
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 3.0e-75 286.2 309 51.8
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 1.1e-74 284.3 296 52.0
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 1.5e-74 283.9 390 44.4
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 2.5e-74 283.1 302 54.3
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 5.6e-74 282.0 297 52.2
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 2.1e-73 280.0 301 52.5
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 2.8e-73 279.6 303 50.2
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 1.5e-71 273.9 300 52.3
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 2.6e-71 273.1 301 52.5
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 1.7e-70 270.4 298 50.0
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 2.9e-70 269.6 256 58.2
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 4.2e-69 265.8 307 50.5
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 1.6e-68 263.8 298 48.7
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 2.7e-68 263.1 303 48.5
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 1.0e-67 261.2 300 47.3
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 1.0e-67 261.2 296 49.3
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 1.8e-67 260.4 301 49.5
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 2.3e-67 260.0 273 53.8
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 6.7e-67 258.5 271 56.1
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 5.7e-66 255.4 314 48.1
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 7.4e-66 255.0 298 50.7
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 9.6e-66 254.6 234 55.1
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 9.6e-66 254.6 277 51.3
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 4.8e-65 252.3 274 52.9
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 6.2e-65 251.9 281 52.3
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 1.8e-64 250.4 304 49.7
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 1.2e-63 247.7 302 48.0
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 2.6e-63 246.5 283 51.2
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 3.4e-63 246.1 312 48.4
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 5.8e-63 245.4 292 47.6
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 1.0e-62 244.6 305 46.9
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 6.5e-62 241.9 219 55.7
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 1.9e-61 240.4 310 45.2
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 5.5e-61 238.8 215 56.3
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 9.3e-61 238.0 215 56.3
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 4.6e-60 235.7 298 47.0
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 7.9e-60 235.0 296 46.6
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 1.0e-59 234.6 311 44.1
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 1.8e-59 233.8 219 54.3
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 6.7e-59 231.9 280 47.9
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 8.7e-59 231.5 276 48.6
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 3.3e-58 229.6 276 48.9
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 3.3e-58 229.6 299 45.2
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 3.3e-58 229.6 305 43.0
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 5.7e-58 228.8 306 45.1
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 4.8e-57 225.7 301 42.9
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 1.1e-56 224.6 309 43.0
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 6.9e-56 221.9 287 46.7
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 2.2e-54 216.9 300 41.0
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 2.9e-54 216.5 309 44.7
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 2.5e-53 213.4 267 46.8
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 2.1e-52 210.3 237 51.9
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 3.6e-52 209.5 335 43.0
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 7.9e-52 208.4 272 48.5
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 3.0e-51 206.5 296 45.3
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 3.9e-51 206.1 241 50.6
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 4.3e-50 202.6 316 42.7
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 1.7e-49 200.7 271 46.1
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 5.3e-48 195.7 269 44.2
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 2.2e-46 190.3 290 45.2
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 3.6e-44 183.0 313 39.0
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 1.5e-42 177.6 221 41.2
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 5.3e-40 169.1 243 44.4
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 1.7e-38 164.1 125 63.2
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 3.8e-38 162.9 130 56.9
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 8.5e-38 161.8 238 46.2
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 9.4e-37 158.3 187 48.7
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 6.7e-35 152.1 240 41.2
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 6.3e-33 145.6 270 36.7
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 1.9e-29 134.0 104 58.7
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 5.5e-29 132.5 277 33.2
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 5.5e-29 132.5 100 65.0
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 1.8e-27 127.5 230 30.4
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 3.4e-26 123.2 195 43.6
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 4.1e-24 116.3 218 33.5
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 1.0e-22 111.7 120 48.3
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 1.1e-21 108.2 64 78.1
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 1.1e-21 108.2 64 78.1
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 9.4e-21 105.1 285 30.9
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 2.3e-19 100.5 90 63.3
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 1.2e-18 98.2 219 30.6
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 2.9e-14 83.6 64 59.4
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 2.2e-09 67.4 129 32.6
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 8.3e-09 65.5 153 25.5
TAR636G2555 Trochodendron aralioides HOM05D005876 ORTHO05D007326 7.8e-07 58.9 115 40.9


User provided reference genes

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