Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 3.5e-200 701.4 357 100.0
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 4.1e-124 448.7 337 71.5
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 1.5e-118 430.3 323 70.3
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 2.2e-117 426.4 340 66.2
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 3.7e-117 425.6 365 63.6
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 4.1e-116 422.2 348 66.7
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 1.7e-114 416.8 346 64.5
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 5.0e-114 415.2 346 63.9
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 4.7e-112 408.7 344 63.4
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 3.3e-110 402.5 351 63.2
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 1.8e-108 396.7 328 65.9
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 5.3e-108 395.2 345 63.8
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 7.0e-108 394.8 346 62.7
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 7.0e-108 394.8 329 64.1
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 9.1e-108 394.4 337 64.4
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 1.6e-107 393.7 343 62.1
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 2.6e-107 392.9 318 65.4
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 3.8e-106 389.0 349 60.5
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 5.0e-106 388.7 346 59.2
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 1.9e-105 386.7 349 61.6
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 1.9e-105 386.7 344 59.9
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 7.2e-105 384.8 323 64.7
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 3.6e-104 382.5 361 59.3
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 3.6e-104 382.5 357 59.7
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 3.6e-104 382.5 343 61.2
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 1.0e-103 380.9 339 59.9
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 2.3e-103 379.8 345 60.0
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 3.0e-103 379.4 346 61.3
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 8.8e-103 377.9 339 59.9
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 2.6e-102 376.3 347 59.7
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 3.5e-99 365.9 338 60.1
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 4.5e-99 365.5 350 59.1
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 2.9e-98 362.8 340 60.0
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 8.5e-98 361.3 344 59.6
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 3.2e-97 359.4 342 58.8
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 1.6e-96 357.1 338 55.3
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 6.1e-96 355.1 345 55.7
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 8.0e-96 354.8 341 59.2
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 2.3e-95 353.2 341 57.2
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 2.3e-95 353.2 331 57.1
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 5.2e-95 352.1 341 57.5
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 1.2e-94 350.9 336 58.0
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 1.2e-94 350.9 345 56.5
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 2.0e-94 350.1 335 57.6
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 2.6e-94 349.7 336 58.3
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 3.4e-94 349.4 336 57.1
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 2.8e-93 346.3 335 56.4
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 4.8e-93 345.5 339 56.6
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 6.3e-93 345.1 295 61.0
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 8.3e-93 344.7 344 55.8
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 3.1e-92 342.8 336 57.1
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 3.1e-92 342.8 336 56.8
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 3.1e-92 342.8 348 56.6
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 5.4e-92 342.0 277 63.9
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 1.2e-91 340.9 315 60.0
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 1.2e-91 340.9 334 57.8
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 2.0e-91 340.1 343 57.7
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 4.5e-91 339.0 335 55.5
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 4.5e-91 339.0 350 52.6
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 2.2e-90 336.7 331 56.2
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 1.9e-89 333.6 347 52.2
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 3.2e-89 332.8 335 54.0
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 1.6e-88 330.5 333 53.5
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 2.8e-88 329.7 341 53.7
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 4.7e-88 328.9 334 54.8
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 6.1e-88 328.6 350 52.6
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 5.2e-87 325.5 346 54.6
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 6.8e-87 325.1 345 53.0
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 8.8e-87 324.7 291 59.1
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 1.5e-86 323.9 355 50.4
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 5.7e-86 322.0 355 50.1
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 9.8e-86 321.2 327 54.4
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 2.8e-85 319.7 319 55.5
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 4.9e-85 318.9 345 50.1
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 8.3e-85 318.2 336 50.9
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 1.4e-84 317.4 387 48.3
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 3.1e-84 316.2 334 50.9
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 2.0e-83 313.5 293 57.7
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 2.0e-83 313.5 319 54.5
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 8.6e-82 308.1 298 56.4
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 1.9e-81 307.0 365 48.8
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 1.9e-81 307.0 309 54.0
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 3.6e-80 302.8 347 49.6
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 3.6e-80 302.8 309 52.8
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 3.7e-77 292.7 336 50.3
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 7.0e-76 288.5 275 55.6
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 5.8e-70 268.9 341 49.0
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 1.3e-61 241.1 302 45.4
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 1.6e-59 234.2 331 45.6
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 9.5e-57 224.9 242 47.9
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 1.8e-55 220.7 219 54.8
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 5.8e-54 215.7 284 45.4
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 7.6e-54 215.3 204 55.9
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 7.6e-54 215.3 285 42.8
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 2.2e-37 160.6 141 61.7
TPR.G40038 Trifolium pratense HOM05D007241 ORTHO05D009142 1.0e-34 151.8 96 74.0
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 9.9e-30 135.2 266 36.1
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 4.2e-28 129.8 140 56.4
Mapoly0003s0142 Marchantia polymorpha HOM05D007241 ORTHO05D009142 2.3e-26 124.0 347 27.1
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 4.0e-23 113.2 109 56.0
Pp3c24_19950 Physcomitrium patens HOM05D007241 ORTHO05D009142 6.5e-21 105.9 282 27.3
CBR_g25746 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-19 101.7 312 25.0
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 4.6e-19 99.8 91 54.9
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 3.0e-18 97.1 131 48.1
SEGI_13087 Sequoiadendron giganteum HOM05D007241 ORTHO05D009142 1.2e-11 75.1 101 39.6
SMO164G0023 Selaginella moellendorffii HOM05D007241 ORTHO05D009142 3.9e-10 70.1 321 24.9
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 1.8e-07 61.2 52 57.7


User provided reference genes

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