Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 2.4e-156 555.8 368 100.0
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 3.8e-101 372.5 371 77.6
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 1.1e-100 370.9 372 77.7
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 1.2e-99 367.5 344 79.9
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 4.7e-99 365.5 372 75.8
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 1.5e-97 360.5 361 75.3
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 2.8e-96 356.3 356 78.7
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 3.7e-96 355.9 377 74.3
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 3.7e-96 355.9 377 74.3
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 3.7e-96 355.9 374 75.7
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 8.2e-96 354.8 374 75.1
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.1e-95 354.4 374 74.9
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 1.1e-95 354.4 375 74.9
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 1.4e-95 354.0 375 75.5
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 7.0e-95 351.7 374 74.3
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 9.1e-95 351.3 374 74.1
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 9.1e-95 351.3 373 75.1
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 1.2e-94 350.9 373 73.2
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 2.0e-94 350.1 341 77.1
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 3.5e-94 349.4 375 74.4
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 4.5e-94 349.0 374 74.1
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 1.0e-93 347.8 373 58.4
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 1.0e-93 347.8 375 73.6
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 1.0e-93 347.8 372 72.8
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 2.2e-93 346.7 374 73.8
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 2.9e-93 346.3 375 59.2
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 2.5e-92 343.2 373 74.3
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 4.2e-92 342.4 376 72.6
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 9.4e-92 341.3 315 86.0
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 9.4e-92 341.3 375 72.5
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 9.4e-92 341.3 367 72.5
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 1.6e-91 340.5 364 73.1
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 3.6e-91 339.3 401 59.6
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 3.6e-91 339.3 375 72.5
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 6.1e-91 338.6 374 64.2
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 6.1e-91 338.6 374 73.0
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 1.0e-90 337.8 373 73.2
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 4.0e-90 335.9 374 74.6
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 6.7e-90 335.1 373 72.1
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 1.5e-89 334.0 370 73.0
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 2.0e-89 333.6 373 73.7
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.3e-89 332.8 373 73.5
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 4.4e-89 332.4 343 76.1
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 4.4e-89 332.4 369 71.5
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 4.8e-88 328.9 382 71.2
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 6.3e-88 328.6 386 69.9
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 1.1e-87 327.8 374 72.5
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 2.4e-87 326.6 374 63.1
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 4.1e-87 325.9 396 68.9
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 1.6e-86 323.9 373 71.8
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 1.6e-86 323.9 378 73.0
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 2.7e-86 323.2 374 73.3
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 2.2e-85 320.1 374 73.0
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 2.9e-85 319.7 374 71.1
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 6.5e-85 318.5 376 72.1
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 8.5e-85 318.2 373 61.1
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 5.5e-84 315.5 381 70.3
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 1.2e-83 314.3 375 70.9
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 6.1e-83 312.0 374 72.5
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 1.0e-82 311.2 373 71.0
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.0e-82 311.2 373 69.2
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 3.0e-82 309.7 378 71.2
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 6.8e-82 308.5 378 50.8
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 1.8e-79 300.4 380 68.7
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 5.4e-79 298.9 389 66.6
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 3.5e-78 296.2 376 69.1
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 6.6e-77 292.0 355 73.0
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.5e-76 290.8 375 67.7
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 2.1e-75 287.0 380 67.9
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 2.3e-74 283.5 384 68.0
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 5.2e-74 282.3 373 66.5
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 2.6e-73 280.0 381 66.4
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 2.2e-72 276.9 319 75.5
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.2e-70 271.2 377 67.4
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 2.7e-70 270.0 377 66.6
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 1.3e-69 267.7 366 67.8
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 1.7e-69 267.3 344 69.2
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 6.6e-69 265.4 382 65.4
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 7.3e-68 261.9 347 70.9
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 2.8e-67 260.0 347 70.9
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 2.8e-67 260.0 327 62.1
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 3.6e-67 259.6 366 65.0
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 1.4e-66 257.7 370 61.9
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 1.4e-66 257.7 370 61.9
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 8.9e-66 255.0 370 61.6
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 8.9e-66 255.0 358 62.8
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 9.8e-65 251.5 370 61.1
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 9.8e-65 251.5 366 64.5
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 3.7e-64 249.6 495 37.4
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 8.3e-64 248.4 376 60.4
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 1.4e-63 247.7 380 61.3
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 1.9e-63 247.3 380 60.3
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 3.2e-63 246.5 274 78.1
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 3.2e-63 246.5 380 61.1
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 3.2e-63 246.5 378 61.1
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 9.2e-63 245.0 387 60.5
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 1.6e-62 244.2 390 51.8
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 7.8e-62 241.9 333 68.2
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 1.0e-61 241.5 369 61.0
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 1.5e-60 237.7 378 59.3
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 1.9e-60 237.3 371 60.1
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 2.1e-59 233.8 381 60.9
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 1.8e-58 230.7 390 50.5
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 8.9e-58 228.4 267 73.8
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 1.3e-56 224.6 367 62.7
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 3.7e-56 223.0 327 69.1
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 1.4e-55 221.1 374 57.8
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 3.2e-55 219.9 326 70.2
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 7.0e-55 218.8 372 58.6
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 1.0e-53 214.9 358 60.3
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 1.5e-52 211.1 165 64.8
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 1.9e-47 194.1 176 61.4
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 1.6e-46 191.0 306 64.4
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 6.0e-46 189.1 132 81.1
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 2.3e-45 187.2 132 81.8
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 7.3e-44 182.2 358 57.3
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 6.2e-43 179.1 132 79.5
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 6.8e-42 175.6 306 61.4
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 6.8e-42 175.6 389 53.0
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 9.9e-41 171.8 171 56.7
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 8.7e-37 158.7 300 58.0
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 8.7e-37 158.7 270 64.1
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 7.3e-36 155.6 358 53.6
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 1.9e-31 141.0 178 52.2
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 3.5e-30 136.7 110 74.5
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 8.7e-29 132.1 359 50.1
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 2.1e-27 127.5 143 48.3
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 1.8e-26 124.4 265 59.6
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.1e-26 123.6 133 60.9
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 6.4e-24 115.9 235 64.3
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 1.8e-18 97.8 225 54.7
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 3.1e-18 97.1 404 46.0
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 5.8e-17 92.8 101 52.5
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 2.5e-15 87.4 84 75.0
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 6.0e-14 82.8 59 67.8
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 3.9e-13 80.1 55 70.9
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 1.9e-12 77.8 55 69.1
Oeu023416.1 Olea europaea HOM05D005383 ORTHO05D006722 2.5e-07 60.8 37 86.5


User provided reference genes

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