Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 3.0e-193 678.3 337 100.0
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 2.5e-147 525.8 340 78.8
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 1.4e-145 520.0 331 77.0
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 5.0e-140 501.5 338 74.6
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 1.5e-139 500.0 331 74.0
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 3.2e-139 498.8 337 73.3
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 4.0e-137 491.9 334 71.9
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 8.8e-137 490.7 333 72.4
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 8.8e-137 490.7 334 72.5
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 4.4e-136 488.4 334 71.6
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 7.4e-136 487.6 333 71.5
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 9.7e-136 487.3 333 71.5
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 6.3e-135 484.6 333 70.6
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 1.4e-134 483.4 334 71.0
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.2e-133 480.3 334 70.4
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 2.6e-133 479.2 337 70.9
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 1.0e-132 477.2 335 72.5
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 2.2e-132 476.1 330 71.8
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 8.0e-130 467.6 330 70.6
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 1.5e-128 463.4 336 69.9
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 2.2e-127 459.5 329 69.3
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 4.8e-127 458.4 329 69.6
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 3.1e-126 455.7 332 69.6
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 1.6e-125 453.4 338 68.3
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 2.7e-125 452.6 329 67.8
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 4.5e-125 451.8 338 68.0
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 5.9e-125 451.4 330 69.1
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 5.9e-125 451.4 326 69.3
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 1.0e-124 450.7 337 67.7
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 1.3e-124 450.3 331 70.1
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 1.3e-124 450.3 335 69.0
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 1.3e-124 450.3 337 67.4
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 2.9e-124 449.1 329 67.2
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 6.5e-124 448.0 334 67.4
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 6.5e-124 448.0 331 68.9
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 8.5e-124 447.6 339 68.4
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 8.5e-124 447.6 329 66.3
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 1.5e-123 446.8 361 64.3
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 2.5e-123 446.0 332 67.5
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 2.5e-123 446.0 329 69.0
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 3.2e-123 445.7 337 66.8
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 4.2e-123 445.3 333 67.6
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 4.2e-123 445.3 330 67.3
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 4.2e-123 445.3 330 67.6
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 5.5e-123 444.9 331 67.4
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 7.2e-123 444.5 331 69.8
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 7.2e-123 444.5 332 69.0
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 9.4e-123 444.1 330 66.4
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.2e-122 443.7 330 67.3
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 1.6e-122 443.4 344 68.0
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 1.6e-122 443.4 329 67.5
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 1.8e-121 439.9 338 65.7
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 1.8e-121 439.9 331 69.8
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 3.0e-121 439.1 332 64.5
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 4.0e-121 438.7 331 66.8
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 4.0e-121 438.7 330 67.0
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 1.2e-120 437.2 329 65.7
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 1.3e-119 433.7 336 66.7
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 1.7e-119 433.3 331 67.4
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 4.9e-119 431.8 339 63.4
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 8.3e-119 431.0 340 64.1
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 1.3e-116 423.7 329 62.9
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 5.0e-116 421.8 329 62.6
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.1e-115 420.6 374 59.1
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 7.2e-115 417.9 338 63.9
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 4.0e-113 412.1 347 59.7
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 9.8e-112 407.5 331 61.3
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 1.3e-111 407.1 323 67.8
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 7.8e-109 397.9 337 59.9
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 1.3e-108 397.1 337 59.9
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 8.6e-108 394.4 331 61.0
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 1.6e-106 390.2 331 60.4
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 6.2e-106 388.3 331 60.4
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 8.0e-106 387.9 331 61.0
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 2.3e-105 386.3 331 60.4
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 2.3e-105 386.3 331 60.4
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 3.1e-105 386.0 331 60.1
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 8.9e-105 384.4 340 59.1
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 1.3e-103 380.6 331 58.6
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 8.3e-103 377.9 289 66.1
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 1.1e-102 377.5 335 58.8
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 5.4e-102 375.2 324 59.0
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 1.2e-101 374.0 339 57.5
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 6.0e-101 371.7 335 59.1
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 5.6e-99 365.2 331 58.6
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 9.5e-99 364.4 305 62.0
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 8.1e-98 361.3 330 57.3
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 2.3e-97 359.8 331 55.6
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 1.2e-96 357.5 336 57.1
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 3.4e-96 355.9 331 56.8
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 4.4e-96 355.5 331 55.9
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 1.7e-95 353.6 245 71.8
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 2.9e-95 352.8 331 55.3
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 3.5e-93 345.9 349 52.4
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 2.3e-92 343.2 247 73.7
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 5.6e-91 338.6 302 60.3
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 3.4e-80 302.8 275 57.8
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 4.9e-79 298.9 364 46.7
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 1.4e-78 297.4 338 50.3
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 2.3e-68 263.5 335 44.8
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 5.6e-67 258.8 180 71.7
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 7.6e-64 248.4 315 45.1
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 7.1e-62 241.9 463 34.8
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 6.9e-57 225.3 150 72.0
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 6.5e-55 218.8 190 62.1
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 3.2e-54 216.5 343 37.6
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 3.5e-53 213.0 335 40.6
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 2.5e-51 206.8 165 64.8
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 1.0e-36 158.3 189 48.7
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.0e-36 158.3 170 51.8
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.8e-36 157.5 147 55.1
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 2.3e-36 157.1 163 47.9
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 1.1e-33 148.3 148 54.1
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 3.6e-29 133.3 150 47.3
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 1.8e-28 131.0 79 74.7
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 1.4e-25 121.3 81 70.4
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 2.6e-19 100.5 61 68.9
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 9.7e-19 98.6 132 42.4
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 1.0e-15 88.6 76 59.2
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 3.8e-15 86.7 133 42.9
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 3.0e-12 77.0 55 63.6
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 1.2e-11 75.1 57 61.4
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 9.8e-11 72.0 55 70.9
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 1.5e-06 58.2 81 43.2
SGA_v2.0_scaffold7G03663 Striga asiatica HOM05D000015 ORTHO05D000984 2.5e-06 57.4 33 81.8


User provided reference genes

Program Settings