Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 2.6e-89 332.0 165 100.0
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 7.5e-73 277.3 164 80.5
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 2.2e-72 275.8 164 79.3
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 7.8e-62 240.7 164 70.1
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 1.9e-55 219.5 143 73.4
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.0e-53 211.5 163 63.2
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 1.1e-52 210.3 163 61.3
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 3.3e-52 208.8 163 65.0
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.1e-50 203.8 166 62.7
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 1.1e-50 203.8 163 62.6
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.4e-50 203.4 163 60.7
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.8e-50 203.0 162 58.6
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.1e-50 202.2 167 60.5
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.2e-50 201.4 167 59.9
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 8.9e-50 200.7 165 61.8
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.2e-49 200.3 164 59.1
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 2.0e-49 199.5 163 61.3
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.0e-49 199.5 163 61.3
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.6e-49 199.1 165 61.2
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 2.6e-49 199.1 170 59.4
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.4e-49 198.7 163 62.6
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 3.4e-49 198.7 132 65.9
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 4.4e-49 198.4 164 62.2
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 4.4e-49 198.4 165 58.8
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 1.7e-48 196.4 163 60.1
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.2e-48 196.1 163 60.1
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 2.9e-48 195.7 170 58.8
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 4.9e-48 194.9 172 56.4
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 6.4e-48 194.5 170 58.8
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 6.4e-48 194.5 170 58.8
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 6.4e-48 194.5 169 58.0
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 1.4e-47 193.4 172 58.1
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.9e-47 193.0 172 55.2
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.9e-47 193.0 170 58.2
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 2.4e-47 192.6 132 65.2
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 4.1e-47 191.8 162 56.2
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 1.6e-46 189.9 154 60.4
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 2.7e-46 189.1 164 58.5
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 2.7e-46 189.1 172 55.2
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 2.7e-46 189.1 171 55.6
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 3.5e-46 188.7 164 57.3
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 4.6e-46 188.3 113 70.8
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 4.6e-46 188.3 170 56.5
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 6.0e-46 188.0 191 52.9
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 6.0e-46 188.0 191 54.5
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 6.0e-46 188.0 167 56.3
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 1.3e-45 186.8 167 56.9
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.3e-45 186.8 165 58.8
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 3.0e-45 185.7 162 54.3
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 5.1e-45 184.9 172 54.7
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 6.6e-45 184.5 132 64.4
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 6.6e-45 184.5 151 58.3
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 6.6e-45 184.5 161 55.9
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 2.5e-44 182.6 133 61.7
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 4.3e-44 181.8 191 51.3
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 7.3e-44 181.0 153 58.2
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.3e-44 181.0 113 69.0
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 9.5e-44 180.6 130 60.8
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 1.2e-43 180.3 150 57.3
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.6e-43 179.9 165 56.4
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.1e-43 179.5 120 67.5
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.1e-43 179.5 176 54.5
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 2.8e-43 179.1 161 55.3
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.8e-43 179.1 113 68.1
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 3.6e-43 178.7 115 69.6
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 3.6e-43 178.7 165 51.5
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 3.6e-43 178.7 119 67.2
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 4.7e-43 178.3 167 51.5
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 6.2e-43 177.9 133 60.2
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 6.2e-43 177.9 189 49.7
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 8.1e-43 177.6 163 54.6
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 8.1e-43 177.6 163 54.6
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.1e-42 177.2 165 52.7
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 1.8e-42 176.4 162 53.7
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 2.3e-42 176.0 120 65.0
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 3.1e-42 175.6 169 53.3
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 3.1e-42 175.6 165 52.7
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 3.1e-42 175.6 113 68.1
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.1e-42 175.6 113 67.3
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 4.0e-42 175.3 128 61.7
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 4.0e-42 175.3 136 60.3
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 5.2e-42 174.9 154 57.8
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 5.2e-42 174.9 162 51.9
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 6.8e-42 174.5 161 52.8
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 6.8e-42 174.5 150 56.7
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 8.9e-42 174.1 155 54.8
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 8.9e-42 174.1 155 54.8
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 8.9e-42 174.1 155 54.8
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 1.5e-41 173.3 150 56.0
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 1.5e-41 173.3 161 54.7
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 2.6e-41 172.6 153 56.2
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 2.6e-41 172.6 153 56.2
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 2.6e-41 172.6 153 56.2
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 2.6e-41 172.6 153 56.2
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 3.4e-41 172.2 156 53.8
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 3.4e-41 172.2 130 59.2
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 3.4e-41 172.2 165 53.9
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 5.8e-41 171.4 150 55.3
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 5.8e-41 171.4 130 56.9
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 5.8e-41 171.4 130 56.9
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 5.8e-41 171.4 127 62.2
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 7.6e-41 171.0 156 55.8
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 7.6e-41 171.0 118 63.6
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 9.9e-41 170.6 154 54.5
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 9.9e-41 170.6 155 55.5
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 1.3e-40 170.2 153 55.6
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 1.3e-40 170.2 153 55.6
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 1.3e-40 170.2 156 53.8
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.3e-40 170.2 175 52.0
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.2e-40 169.5 121 62.8
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 2.9e-40 169.1 137 56.9
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 3.8e-40 168.7 153 54.2
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.8e-40 168.7 120 60.0
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.9e-39 166.4 120 64.2
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 2.4e-39 166.0 157 54.1
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 3.2e-39 165.6 130 57.7
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 9.2e-39 164.1 165 50.3
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 9.2e-39 164.1 120 58.3
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 1.2e-38 163.7 119 58.8
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 1.6e-38 163.3 155 51.6
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 3.5e-38 162.2 158 51.9
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 4.6e-38 161.8 133 56.4
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 6.0e-38 161.4 165 50.9
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 6.0e-38 161.4 165 49.7
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 6.0e-38 161.4 130 55.4
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.9e-37 158.7 109 64.2
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 6.6e-37 157.9 116 57.8
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 6.6e-37 157.9 167 45.5
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 1.1e-36 157.1 167 45.5
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 3.3e-36 155.6 165 49.1
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 5.6e-36 154.8 161 52.2
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 7.3e-36 154.5 159 52.2
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 1.6e-35 153.3 113 58.4
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.0e-34 148.7 103 63.1
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.6e-33 146.0 149 50.3
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 5.8e-33 144.8 118 52.5
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 9.3e-31 137.5 138 50.0
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.3e-29 133.7 119 52.9
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.7e-29 133.3 175 44.0
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 2.3e-29 132.9 118 49.2
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 1.1e-28 130.6 156 45.5
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.3e-28 129.0 95 58.9
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 2.1e-27 126.3 141 46.8
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 4.8e-27 125.2 154 40.3
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 8.1e-27 124.4 109 53.2
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 1.4e-26 123.6 96 56.2
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 1.2e-25 120.6 112 50.0
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.5e-25 120.2 123 43.9
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.5e-25 120.2 92 56.5
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.5e-25 120.2 84 60.7
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 2.2e-24 116.3 107 46.7
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 2.4e-23 112.8 111 46.8
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 3.0e-21 105.9 127 44.9
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 3.9e-21 105.5 109 48.6
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 1.1e-20 104.0 118 41.5
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.6e-20 101.7 109 48.6
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 1.3e-19 100.5 114 40.4
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.6e-19 100.1 118 41.5
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.1e-19 99.8 107 44.9
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 3.6e-19 99.0 151 36.4
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.2e-19 98.2 68 60.3
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 1.8e-18 96.7 139 40.3
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 3.1e-18 95.9 153 34.6
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 1.2e-17 94.0 114 37.7
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.6e-17 92.8 76 55.3
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 9.3e-15 84.3 57 63.2
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 5.1e-13 78.6 64 53.1
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 1.4e-10 70.5 138 33.3
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 1.1e-07 60.8 135 32.6
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 5.5e-07 58.5 45 55.6
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 4.6e-06 55.5 39 56.4


User provided reference genes

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