Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 2506.1 1334 100.0
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1896.3 1345 76.2
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1830.1 1345 73.5
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1732.6 1342 71.5
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1732.2 1346 69.8
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1640.6 1352 66.6
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1620.1 1351 64.5
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1619.4 1355 65.7
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1589.7 1362 65.1
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1583.5 1343 64.9
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1575.1 1350 64.5
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1573.9 1352 64.6
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1565.1 1348 64.5
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1557.7 1356 63.5
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1557.7 1361 63.5
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 1555.4 1358 63.2
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 1538.1 1355 62.9
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1529.6 1369 61.9
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 1527.7 1352 62.6
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1527.3 1337 63.4
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1508.8 1356 61.6
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1506.9 1380 61.5
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1504.2 1390 61.1
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1499.2 1359 62.2
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1495.3 1359 62.0
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1489.2 1364 60.2
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1481.5 1350 61.7
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1479.9 1336 61.8
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1469.1 1372 61.0
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1457.2 1369 60.1
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1454.9 1359 60.4
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1453.7 1353 59.5
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1453.7 1355 59.8
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1451.8 1356 58.9
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1442.2 1360 60.4
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1439.5 1334 60.6
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1432.9 1332 60.6
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1422.5 1354 58.3
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1421.0 1344 59.7
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1412.5 1351 59.5
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1409.8 1361 58.0
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1408.3 1359 59.2
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1406.3 1363 57.1
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1389.0 1356 57.7
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1388.6 1373 57.5
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1387.9 1370 58.4
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 1387.1 1357 57.1
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1380.5 1356 57.3
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1379.4 1357 57.0
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1377.5 1366 57.4
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1375.5 1353 56.7
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1374.0 1366 57.2
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1373.6 1356 56.8
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1363.2 1358 56.6
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1362.8 1355 57.9
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1360.5 1387 57.3
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1360.1 1294 60.5
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1360.1 1401 55.7
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 1357.4 1366 56.1
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1350.5 1354 57.9
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1349.3 1360 57.5
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1347.8 1359 57.6
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1347.4 1352 57.8
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1345.9 1355 57.1
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 1343.2 1367 55.7
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1343.2 1351 57.7
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1340.5 1353 57.5
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1334.7 1355 57.0
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1331.6 1354 57.0
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1328.5 1220 61.2
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1328.5 1276 59.2
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1325.8 1361 57.2
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1323.1 1287 56.7
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1320.1 1357 56.7
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 0.0e+00 1318.1 1360 56.0
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1311.6 1196 59.3
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1310.8 1353 56.8
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1308.1 1360 55.4
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1307.0 1360 55.0
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1303.5 1367 54.4
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1293.5 1239 58.1
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 1287.3 1396 53.4
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1281.5 1353 54.5
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 1279.2 1345 55.2
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 0.0e+00 1270.4 1359 54.6
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1237.2 1351 54.4
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1235.3 1414 53.5
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1217.6 1279 54.9
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1192.2 1063 62.2
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1189.9 1072 61.2
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 0.0e+00 1176.0 1362 51.1
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1169.5 1170 57.1
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 0.0e+00 1162.1 1367 49.7
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1161.0 1181 56.6
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 0.0e+00 1137.9 1064 59.0
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 0.0e+00 1124.4 1008 60.7
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 0.0e+00 1093.2 1358 48.9
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 9.7e-304 1047.3 1367 47.3
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 5.9e-301 1038.1 1328 48.4
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 1.4e-299 1033.5 1194 50.9
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 2.5e-291 1006.1 978 56.2
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 6.1e-290 1001.5 1323 46.4
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 3.2e-283 979.2 1319 46.6
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 1.9e-267 926.8 951 54.4
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.0e-244 851.3 951 51.5
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 5.2e-241 839.0 754 59.5
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.4e-238 830.9 772 59.3
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 7.8e-237 825.1 1174 45.0
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 3.5e-229 799.7 1483 38.9
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 9.2e-222 775.0 691 59.3
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 3.3e-219 766.5 828 53.1
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 2.8e-218 763.5 1072 46.5
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 3.4e-216 756.5 1123 43.3
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 3.2e-206 723.4 1513 35.4
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.4e-190 671.4 825 48.4
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 5.7e-179 632.9 504 67.5
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.8e-162 577.4 458 67.9
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 4.8e-154 550.1 647 50.5
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.8e-153 548.1 1227 33.5
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 7.0e-145 519.6 1511 30.0
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 7.2e-142 509.6 407 68.3
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.5e-131 475.3 413 64.2
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 3.9e-103 380.9 342 63.2
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 2.8e-101 374.8 329 62.6
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 1.2e-91 342.8 441 48.3
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.9e-82 310.8 318 55.3
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.1e-80 305.4 363 51.2
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 2.5e-78 298.5 275 62.5
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 2.1e-72 278.9 919 28.3
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 1.4e-60 239.6 348 39.9
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 4.5e-59 234.6 598 36.3
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 1.1e-57 229.9 246 57.3
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 1.1e-41 176.8 155 58.7
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 2.7e-32 145.6 106 70.8
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 3.0e-31 142.1 112 61.6
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 2.2e-29 136.0 82 78.0
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 1.2e-27 130.2 235 37.4
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.5e-25 122.5 191 46.1
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 3.3e-25 122.1 87 66.7
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 1.2e-24 120.2 115 57.4
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 2.6e-22 112.5 113 54.9
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 9.8e-14 84.0 91 59.3
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 1.0e-10 73.9 50 74.0
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 9.5e-09 67.4 59 55.9
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.2e-08 67.0 70 50.0
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.2e-08 67.0 70 50.0
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 1.4e-07 63.5 88 45.5
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 1.8e-07 63.2 154 28.6
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 1.8e-07 63.2 59 64.4
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 4.0e-07 62.0 144 27.1
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 6.8e-07 61.2 161 25.5
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 2.0e-06 59.7 150 26.0
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 2.6e-06 59.3 132 25.8
BraA03t14040Z Brassica rapa HOM05D002639 ORTHO05D003094 3.4e-06 58.9 48 64.6
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 3.4e-06 58.9 132 26.5
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 4.4e-06 58.5 129 24.8
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 4.4e-06 58.5 184 26.6
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 5.8e-06 58.2 132 25.8
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 5.8e-06 58.2 134 25.4
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 7.5e-06 57.8 132 25.8
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 7.5e-06 57.8 133 26.3
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 9.8e-06 57.4 129 24.8


User provided reference genes

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