Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 4.6e-103 377.9 186 100.0
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 2.0e-90 335.9 186 87.6
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.8e-83 312.8 184 79.3
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 6.9e-83 310.8 178 82.6
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 9.0e-83 310.5 177 85.3
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 2.0e-82 309.3 178 83.7
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 1.3e-81 306.6 185 78.9
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 1.7e-81 306.2 178 82.6
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.7e-81 306.2 178 83.1
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 2.2e-81 305.8 178 81.5
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 3.8e-81 305.1 178 83.1
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 1.4e-80 303.1 179 82.1
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 1.9e-80 302.8 182 79.1
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.4e-80 302.4 178 82.6
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 7.1e-80 300.8 178 80.9
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 7.1e-80 300.8 178 80.9
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 7.1e-80 300.8 178 82.0
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 9.3e-80 300.4 178 82.0
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 1.6e-79 299.7 178 80.3
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 1.6e-79 299.7 186 76.3
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 4.6e-79 298.1 178 81.5
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 6.0e-79 297.7 182 81.9
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 1.0e-78 297.0 178 81.5
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 1.3e-78 296.6 178 80.9
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 1.3e-78 296.6 186 76.3
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 1.8e-78 296.2 178 80.3
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 2.3e-78 295.8 178 80.9
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 3.0e-78 295.4 178 80.3
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 3.0e-78 295.4 177 79.7
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 6.7e-78 294.3 178 80.3
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 8.7e-78 293.9 178 78.1
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 1.1e-77 293.5 178 80.3
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.1e-77 293.5 178 81.5
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 1.5e-77 293.1 178 78.1
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 1.9e-77 292.7 178 79.2
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 1.9e-77 292.7 178 80.3
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 1.9e-77 292.7 178 80.9
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.3e-76 290.0 178 78.7
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 1.3e-76 290.0 178 78.7
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 1.1e-75 287.0 178 78.7
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 5.3e-75 284.6 178 75.8
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 6.9e-75 284.3 188 73.9
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 6.9e-75 284.3 178 78.1
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 9.0e-75 283.9 178 76.4
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.2e-74 283.5 178 77.5
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 1.5e-74 283.1 180 75.6
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.5e-74 283.1 178 74.7
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.0e-74 282.7 178 75.8
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.0e-74 282.7 178 75.8
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 2.0e-74 282.7 178 78.1
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 3.4e-74 282.0 178 75.3
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 3.4e-74 282.0 175 76.0
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 5.8e-74 281.2 178 76.4
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 5.8e-74 281.2 178 75.8
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 7.6e-74 280.8 178 75.3
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 7.6e-74 280.8 178 75.8
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 1.3e-73 280.0 178 74.2
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.3e-73 280.0 178 74.7
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.3e-73 280.0 178 74.7
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.3e-73 280.0 178 76.4
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 1.3e-73 280.0 179 76.5
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.7e-73 279.6 178 74.7
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 2.2e-73 279.3 178 75.3
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 2.2e-73 279.3 178 75.3
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 4.9e-73 278.1 177 75.1
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 4.9e-73 278.1 177 75.1
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 6.5e-73 277.7 176 74.4
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 8.4e-73 277.3 178 75.3
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 8.4e-73 277.3 178 76.4
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.4e-72 276.6 178 73.0
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 3.2e-72 275.4 178 74.2
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 4.2e-72 275.0 178 73.0
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 7.1e-72 274.2 178 72.5
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 9.3e-72 273.9 178 74.2
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 1.2e-71 273.5 180 72.8
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 1.6e-71 273.1 178 70.2
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.6e-71 273.1 180 72.2
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.1e-71 272.7 178 72.5
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 2.7e-71 272.3 178 75.3
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.3e-70 270.0 178 71.3
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.3e-70 270.0 178 71.3
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 1.8e-70 269.6 178 73.0
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 3.9e-70 268.5 178 72.5
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.1e-70 268.1 178 71.3
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 8.7e-70 267.3 178 70.2
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 1.5e-69 266.5 179 70.9
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 1.5e-69 266.5 178 72.5
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.5e-69 266.5 180 71.7
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.9e-69 266.2 178 71.3
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.9e-69 266.2 178 71.3
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.5e-69 265.8 178 71.3
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 5.7e-69 264.6 178 71.3
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 7.4e-69 264.2 180 70.0
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 9.7e-69 263.8 178 70.2
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.3e-68 263.5 177 70.1
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 2.8e-68 262.3 179 72.1
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 3.7e-68 261.9 178 69.1
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 4.8e-68 261.5 178 71.3
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 8.2e-68 260.8 180 68.9
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 8.2e-68 260.8 180 68.9
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 8.2e-68 260.8 180 68.9
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 1.4e-67 260.0 180 68.9
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 1.4e-67 260.0 180 68.9
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 3.1e-67 258.8 178 69.1
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 5.3e-67 258.1 179 68.2
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 6.9e-67 257.7 180 65.6
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 9.0e-67 257.3 178 68.5
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 1.2e-66 256.9 189 67.7
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 1.2e-66 256.9 179 69.3
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 2.6e-66 255.8 178 69.1
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 7.7e-66 254.2 178 67.4
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 1.3e-65 253.4 169 72.8
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 3.8e-65 251.9 179 67.6
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 1.9e-64 249.6 176 65.9
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 2.5e-64 249.2 181 67.4
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 1.2e-63 246.9 183 66.1
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 1.2e-63 246.9 183 66.1
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.2e-63 246.9 181 66.3
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 3.6e-63 245.4 181 65.7
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 3.6e-63 245.4 181 66.3
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 4.6e-63 245.0 178 67.4
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.0e-62 243.8 178 66.9
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 2.0e-61 239.6 181 64.6
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 7.4e-61 237.7 178 64.0
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 1.2e-58 230.3 182 61.5
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 2.0e-58 229.6 184 61.4
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 3.4e-58 228.8 184 63.6
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 1.7e-57 226.5 183 60.1
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 3.9e-54 215.3 184 56.5
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 8.8e-54 214.2 180 59.4
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 3.3e-53 212.2 185 56.8
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 5.3e-51 204.9 180 58.9
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 5.2e-46 188.3 182 56.0
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 8.8e-46 187.6 165 61.2
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.4e-45 185.3 117 72.6
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 2.0e-42 176.4 195 50.8
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 2.9e-41 172.6 160 53.8
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 3.2e-40 169.1 115 67.0
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 1.4e-38 163.7 179 41.9
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 2.0e-26 123.2 76 77.6
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 3.5e-26 122.5 99 59.6
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.0e-25 120.9 109 58.7
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 2.2e-20 103.2 164 34.1
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 4.1e-11 72.4 52 63.5
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 4.1e-11 72.4 59 59.3
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 5.4e-11 72.0 55 61.8
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 4.7e-07 58.9 40 67.5


User provided reference genes

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