Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 6.3e-146 520.8 269 100.0
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 3.2e-121 438.7 269 84.0
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 1.4e-113 413.3 269 80.3
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 2.1e-112 409.5 269 76.6
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 6.0e-112 407.9 258 82.9
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 1.9e-110 402.9 270 75.9
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 1.2e-109 400.2 269 76.6
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 6.2e-109 397.9 269 75.8
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.1e-108 395.6 270 75.2
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 1.7e-106 389.8 268 70.9
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 8.4e-106 387.5 270 73.7
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 3.2e-105 385.6 254 78.3
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 7.1e-105 384.4 282 70.6
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 1.6e-104 383.3 270 73.0
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 4.6e-104 381.7 268 72.8
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 1.7e-103 379.8 270 72.6
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 6.6e-103 377.9 269 72.1
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 6.6e-103 377.9 269 70.6
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 1.1e-102 377.1 270 72.2
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 1.1e-102 377.1 269 70.6
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 1.9e-102 376.3 269 73.2
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 9.6e-102 374.0 269 72.1
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.3e-101 373.6 270 71.5
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 2.1e-101 372.9 271 70.8
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 4.8e-101 371.7 269 70.3
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 6.2e-101 371.3 272 72.1
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.1e-100 370.5 272 71.3
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.4e-100 370.2 270 71.1
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 1.8e-100 369.8 273 70.7
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.8e-100 369.8 270 71.5
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 2.4e-100 369.4 270 71.5
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 3.1e-100 369.0 272 71.0
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 5.3e-100 368.2 270 68.5
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 6.9e-100 367.9 272 69.1
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 1.5e-99 366.7 271 70.5
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 1.5e-99 366.7 266 69.2
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 1.5e-99 366.7 272 70.2
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 2.0e-99 366.3 270 70.4
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 2.0e-99 366.3 295 65.4
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 2.6e-99 365.9 271 70.8
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 3.4e-99 365.5 269 68.8
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 3.4e-99 365.5 271 70.1
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 4.5e-99 365.2 282 67.7
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 5.8e-99 364.8 270 70.7
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 7.6e-99 364.4 270 70.7
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 7.6e-99 364.4 269 71.0
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 9.9e-99 364.0 270 68.5
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 9.9e-99 364.0 268 68.3
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 1.7e-98 363.2 269 68.0
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 2.2e-98 362.8 272 67.3
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 3.8e-98 362.1 270 69.6
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 3.8e-98 362.1 272 69.5
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 6.4e-98 361.3 268 67.9
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 8.4e-98 360.9 269 69.5
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 1.1e-97 360.5 266 70.3
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 1.1e-97 360.5 271 69.4
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 1.4e-97 360.1 271 70.5
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 3.2e-97 359.0 273 69.2
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 4.2e-97 358.6 272 68.8
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 4.2e-97 358.6 272 68.8
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 5.4e-97 358.2 271 67.5
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 5.4e-97 358.2 271 70.5
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 7.1e-97 357.8 270 67.8
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 9.3e-97 357.5 281 67.6
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 1.6e-96 356.7 270 68.9
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.6e-96 356.7 272 68.8
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 1.6e-96 356.7 271 66.4
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 2.1e-96 356.3 297 64.3
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 2.1e-96 356.3 273 69.2
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 2.7e-96 355.9 271 69.0
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.7e-96 355.9 270 67.8
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 2.7e-96 355.9 270 67.8
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 2.7e-96 355.9 270 67.4
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 3.5e-96 355.5 270 68.9
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 4.6e-96 355.1 270 67.8
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 4.6e-96 355.1 270 67.0
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 7.9e-96 354.4 270 67.8
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 7.9e-96 354.4 270 67.8
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 7.9e-96 354.4 270 67.8
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 7.9e-96 354.4 285 67.7
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.8e-95 353.2 276 69.2
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 5.1e-95 351.7 270 68.1
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 6.7e-95 351.3 273 66.3
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 8.7e-95 350.9 271 69.0
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 1.5e-94 350.1 233 74.7
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 4.3e-94 348.6 284 65.1
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 9.6e-94 347.4 292 61.0
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 9.6e-94 347.4 269 67.7
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 1.6e-93 346.7 272 67.6
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 1.6e-93 346.7 270 65.9
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 3.6e-93 345.5 273 65.9
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 4.8e-93 345.1 256 72.7
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 8.1e-93 344.4 270 65.9
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 8.1e-93 344.4 305 60.0
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 8.1e-93 344.4 305 60.0
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.4e-92 343.6 271 67.9
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 2.4e-92 342.8 270 65.6
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.3e-92 341.7 270 65.9
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 6.9e-92 341.3 271 65.3
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 1.5e-91 340.1 271 66.1
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 2.6e-91 339.3 272 64.7
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 2.6e-91 339.3 272 64.7
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 5.8e-91 338.2 329 57.1
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 3.8e-90 335.5 273 66.7
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 1.9e-89 333.2 272 66.5
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 5.5e-89 331.6 272 67.6
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 3.5e-88 328.9 342 53.2
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 2.3e-87 326.2 272 64.0
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 3.0e-87 325.9 272 63.2
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 3.9e-87 325.5 272 66.5
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 3.9e-87 325.5 272 62.9
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 6.7e-87 324.7 272 63.2
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 8.7e-87 324.3 268 64.6
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 4.8e-85 318.5 236 71.2
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 1.4e-84 317.0 269 60.6
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 2.0e-83 313.2 233 68.2
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 3.4e-83 312.4 230 70.0
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 4.5e-83 312.0 275 64.0
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 4.5e-83 312.0 267 61.0
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 2.5e-81 306.2 317 55.8
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 5.5e-81 305.1 278 61.2
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 5.5e-81 305.1 230 68.7
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 5.5e-81 305.1 271 62.4
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 2.5e-78 296.2 331 53.2
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 7.4e-78 294.7 232 66.8
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 7.4e-78 294.7 231 65.4
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 2.8e-77 292.7 266 60.5
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 3.7e-77 292.4 269 60.2
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 6.3e-77 291.6 230 67.0
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 3.4e-75 285.8 360 48.6
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 4.2e-73 278.9 259 60.2
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 4.6e-72 275.4 231 66.7
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 6.1e-72 275.0 348 48.6
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 2.5e-70 269.6 233 62.7
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 1.8e-68 263.5 278 52.9
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 4.1e-68 262.3 225 60.4
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.2e-66 256.5 283 52.7
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 2.5e-65 253.1 219 61.2
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 1.2e-64 250.8 258 55.4
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.0e-63 247.7 198 67.7
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 6.9e-60 235.0 273 50.2
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 6.9e-60 235.0 273 49.1
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 6.9e-60 235.0 275 50.9
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 7.7e-59 231.5 269 49.8
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 7.2e-57 224.9 190 60.5
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 7.2e-57 224.9 269 49.4
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 6.1e-56 221.9 181 63.5
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 1.8e-55 220.3 201 59.2
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 1.8e-55 220.3 171 65.5
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 3.7e-53 212.6 162 67.3
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 7.7e-51 204.9 175 61.1
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 1.5e-49 200.7 148 68.2
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 9.4e-49 198.0 130 74.6
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 1.6e-48 197.2 148 67.6
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 3.0e-47 193.0 256 48.4
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 1.2e-46 191.0 169 60.9
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 2.6e-46 189.9 150 66.0
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 9.1e-44 181.4 214 50.9
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 4.5e-43 179.1 133 74.4
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 1.5e-41 174.1 232 46.6
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.9e-41 173.7 201 50.2
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 3.6e-40 169.5 150 62.0
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.7e-38 162.2 125 67.2
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 2.2e-37 160.2 232 44.4
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 2.9e-34 149.8 270 41.5
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 3.6e-32 142.9 182 45.6
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 1.5e-30 137.5 139 51.8
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.8e-29 133.3 162 45.7
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 6.3e-29 132.1 88 77.3
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 5.2e-23 112.5 148 45.9
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 2.6e-22 110.2 91 67.0
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 1.1e-20 104.8 182 40.7
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 3.2e-20 103.2 71 73.2
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 8.6e-18 95.1 64 73.4
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.9e-17 94.0 67 68.7
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 7.3e-17 92.0 74 64.9
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 6.6e-10 68.9 167 34.7
HPP92_019650 Vanilla planifolia HOM05D001715 ORTHO05D004824 5.2e-07 59.3 125 35.2
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.2e-06 58.2 42 69.0
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 2.0e-06 57.4 41 65.9
CSS0014250 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.4e-06 56.6 34 79.4


User provided reference genes

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