Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 0.0e+00 1130.5 596 100.0
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 2.0e-232 809.3 599 72.0
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 7.5e-232 807.4 606 71.5
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 6.8e-217 757.7 613 65.4
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 2.6e-208 729.2 612 63.7
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 2.7e-197 692.6 603 63.5
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 4.8e-178 628.6 607 57.7
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 9.0e-177 624.4 607 57.3
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 3.4e-176 622.5 612 57.5
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 6.5e-175 618.2 654 53.4
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 2.7e-173 612.8 613 56.8
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 2.9e-167 592.8 614 57.3
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 3.8e-167 592.4 616 58.3
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 3.6e-165 585.9 613 57.1
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 4.8e-162 575.5 614 56.7
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 6.3e-162 575.1 609 54.7
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 6.3e-162 575.1 613 56.4
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 6.3e-162 575.1 607 53.9
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 1.4e-161 573.9 610 51.6
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 4.5e-160 568.9 605 53.2
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 2.9e-159 566.2 607 53.2
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 8.5e-159 564.7 610 54.1
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 1.1e-158 564.3 608 52.3
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 4.8e-154 548.9 608 51.0
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 4.1e-153 545.8 599 53.4
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 9.1e-153 544.7 610 51.1
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 1.5e-152 543.9 591 53.1
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 2.0e-152 543.5 603 53.1
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 2.9e-151 539.7 608 50.8
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 4.2e-150 535.8 606 51.2
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 9.4e-150 534.6 611 50.7
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.2e-149 534.3 614 51.1
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 2.1e-149 533.5 603 52.1
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.1e-149 533.5 611 50.6
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.1e-149 533.5 606 52.0
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.3e-148 530.0 510 59.8
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 3.0e-148 529.6 606 52.1
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 3.9e-148 529.3 613 54.3
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 5.2e-148 528.9 604 51.2
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 6.7e-148 528.5 612 51.0
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 4.4e-147 525.8 607 50.4
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 1.3e-146 524.2 609 52.7
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 3.7e-146 522.7 608 50.0
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 7.0e-145 518.5 628 49.2
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.2e-144 517.7 608 49.7
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 2.2e-143 513.5 607 50.7
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 3.8e-143 512.7 602 51.8
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 1.9e-142 510.4 596 50.2
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 3.2e-142 509.6 596 50.5
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.2e-142 509.2 611 49.6
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 9.4e-142 508.1 593 51.8
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 1.2e-141 507.7 611 49.6
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 1.8e-140 503.8 607 49.8
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 4.4e-139 499.2 604 49.7
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 9.7e-139 498.0 730 46.4
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 8.3e-138 495.0 629 49.4
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 1.0e-135 488.0 614 49.3
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 2.2e-135 486.9 603 52.1
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 3.8e-135 486.1 608 47.7
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 5.0e-135 485.7 592 48.8
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 4.4e-131 472.6 601 50.2
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 7.5e-131 471.9 651 45.8
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 1.1e-129 468.0 601 48.4
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 5.0e-127 459.1 469 54.2
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 5.0e-127 459.1 760 40.9
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 6.6e-127 458.8 593 47.7
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.9e-126 457.2 609 47.3
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 2.5e-126 456.8 608 48.2
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 3.3e-126 456.4 652 45.9
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 4.2e-126 456.1 585 48.0
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 6.8e-124 448.7 590 48.0
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 4.9e-122 442.6 615 47.5
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 4.1e-121 439.5 607 46.5
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 1.6e-120 437.6 592 46.8
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 5.9e-120 435.6 554 48.9
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 1.0e-119 434.9 612 45.6
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 6.6e-119 432.2 560 49.1
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 1.4e-116 424.5 455 54.9
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 4.4e-115 419.5 544 49.6
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 1.3e-114 417.9 612 47.4
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 1.3e-114 417.9 604 46.0
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 1.1e-113 414.8 462 54.5
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 2.4e-113 413.7 607 45.1
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 7.0e-113 412.1 656 44.1
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.3e-111 407.9 454 53.5
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 6.6e-111 405.6 635 43.6
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 2.8e-109 400.2 541 47.3
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 2.3e-108 397.1 455 53.2
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.2e-107 394.8 600 42.0
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.2e-107 394.8 600 42.0
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 1.5e-107 394.4 466 52.1
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 1.5e-107 394.4 600 45.3
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 2.2e-106 390.6 461 50.3
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 3.2e-105 386.7 460 52.8
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 1.2e-104 384.8 624 44.4
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 2.3e-103 380.6 454 52.4
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 5.1e-103 379.4 450 51.6
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 1.9e-102 377.5 612 42.8
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 9.5e-102 375.2 605 44.5
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.3e-100 370.5 594 41.4
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 2.4e-97 360.5 464 49.6
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 9.2e-97 358.6 473 48.8
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 2.1e-96 357.5 466 49.4
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 3.5e-96 356.7 251 74.1
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 6.0e-96 355.9 464 49.4
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 2.3e-95 354.0 344 57.8
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 9.6e-94 348.6 606 41.1
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 8.1e-93 345.5 328 57.9
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 3.8e-90 336.7 571 45.0
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 6.6e-87 325.9 473 49.3
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 6.6e-87 325.9 464 45.3
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 9.6e-86 322.0 598 40.6
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 1.8e-84 317.8 464 44.6
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 1.2e-83 315.1 472 44.3
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 2.0e-83 314.3 463 45.8
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 9.3e-81 305.4 593 36.4
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 7.9e-80 302.4 202 73.8
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 3.0e-79 300.4 702 38.0
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 3.9e-79 300.1 201 75.6
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 4.0e-76 290.0 413 44.1
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 5.3e-76 289.7 589 38.4
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 2.1e-72 277.7 329 48.9
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 7.6e-67 259.2 191 69.6
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.3e-66 258.5 271 51.3
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 2.3e-63 247.7 144 79.9
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 3.9e-63 246.9 151 78.1
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 3.9e-63 246.9 151 78.1
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 5.7e-62 243.0 211 59.7
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 9.6e-62 242.3 148 77.7
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 1.7e-58 231.5 470 36.0
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 2.9e-58 230.7 143 74.8
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 5.0e-58 229.9 143 74.8
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 5.0e-58 229.9 129 83.7
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 5.5e-57 226.5 143 74.1
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 7.1e-57 226.1 173 63.6
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 2.7e-56 224.2 129 80.6
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 4.6e-56 223.4 190 57.9
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 6.1e-56 223.0 144 73.6
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.3e-54 217.2 354 39.8
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 2.4e-52 211.1 256 47.7
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 3.1e-52 210.7 197 56.9
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 5.9e-51 206.5 468 37.0
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 1.9e-49 201.4 127 73.2
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 2.7e-48 197.6 130 72.3
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 7.9e-48 196.1 196 52.0
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 8.8e-47 192.6 182 59.9
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 1.7e-45 188.3 226 47.3
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 5.3e-44 183.3 449 36.7
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.3e-42 178.7 279 43.0
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 8.8e-39 166.0 468 30.1
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 3.7e-37 160.6 86 84.9
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 1.0e-34 152.5 85 87.1
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 1.8e-31 141.7 83 80.7
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 8.5e-26 122.9 63 90.5
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 2.6e-22 111.3 226 35.4
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.7e-21 108.6 63 81.0
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 1.8e-20 105.1 86 57.0
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.3e-18 99.0 58 74.1
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 8.5e-18 96.3 66 72.7
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 4.2e-17 94.0 139 39.6
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 1.6e-16 92.0 106 47.2
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 4.7e-16 90.5 208 35.6
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 3.5e-11 74.3 94 42.6
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 8.6e-10 69.7 31 100.0
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 9.5e-09 66.2 31 90.3
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 2.8e-08 64.7 52 63.5
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 6.1e-08 63.5 59 55.9
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 5.2e-07 60.5 150 32.0
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.2e-06 59.3 47 63.8
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.6e-06 58.2 47 63.8
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 9.8e-06 56.2 62 50.0


User provided reference genes

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