Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 0.0e+00 1224.2 611 100.0
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 0.0e+00 1090.1 612 88.9
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 0.0e+00 1082.4 614 87.5
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 4.2e-312 1073.5 602 87.9
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 3.0e-308 1061.2 618 86.2
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.1e-307 1059.3 595 87.4
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 5.6e-307 1057.0 610 86.2
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 2.1e-306 1055.0 595 87.2
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 2.8e-306 1054.7 610 86.1
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 2.8e-306 1054.7 634 85.2
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 4.7e-306 1053.9 590 89.2
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 4.4e-304 1047.3 593 87.7
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 4.4e-304 1047.3 619 85.1
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.3e-303 1045.8 558 91.4
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 6.4e-303 1043.5 617 85.1
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 1.4e-302 1042.3 560 90.0
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 1.4e-302 1042.3 623 83.8
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 5.4e-302 1040.4 618 84.8
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 2.3e-300 1035.0 616 83.6
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 1.9e-299 1031.9 620 83.2
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 1.9e-299 1031.9 558 90.1
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 5.6e-299 1030.4 609 83.3
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 8.1e-298 1026.5 602 85.2
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 1.1e-297 1026.2 611 82.8
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 1.2e-296 1022.7 577 85.6
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 2.6e-296 1021.5 577 86.0
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 7.6e-296 1020.0 579 85.5
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 9.9e-296 1019.6 600 83.8
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 9.9e-296 1019.6 559 88.0
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 3.8e-295 1017.7 614 82.1
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 4.9e-295 1017.3 620 81.8
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.4e-294 1015.0 616 81.8
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 4.1e-294 1014.2 601 81.7
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 4.1e-294 1014.2 591 83.9
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 5.4e-294 1013.8 616 82.0
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 9.2e-294 1013.1 622 80.7
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 1.2e-293 1012.7 596 84.4
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 2.1e-293 1011.9 585 84.8
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.7e-293 1011.5 601 81.7
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 2.7e-293 1011.5 611 81.7
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.3e-292 1008.4 577 84.1
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 2.3e-292 1008.4 606 82.7
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 3.9e-292 1007.7 622 81.2
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.1e-292 1007.3 577 83.9
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 6.6e-292 1006.9 583 84.4
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 6.6e-292 1006.9 596 84.6
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 1.5e-291 1005.7 620 81.0
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 4.3e-291 1004.2 618 80.7
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 5.6e-291 1003.8 605 81.5
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 7.3e-291 1003.4 578 83.7
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 9.6e-291 1003.0 609 81.9
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 1.2e-290 1002.7 577 84.4
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 1.2e-290 1002.7 606 80.2
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.2e-290 1002.7 582 84.4
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 2.8e-290 1001.5 666 76.1
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 6.2e-290 1000.3 599 82.0
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 6.2e-290 1000.3 606 81.8
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.1e-289 999.6 606 81.4
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 1.1e-289 999.6 613 81.1
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 1.8e-289 998.8 561 86.1
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 2.4e-289 998.4 591 83.2
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 3.1e-289 998.0 591 82.4
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 3.1e-289 998.0 607 81.2
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 5.2e-289 997.3 591 82.9
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 6.9e-289 996.9 579 83.6
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 9.0e-289 996.5 611 80.5
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.2e-288 996.1 579 83.4
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 1.5e-288 995.7 582 84.0
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.5e-288 995.7 603 81.6
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.6e-288 995.0 583 84.0
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 2.6e-288 995.0 598 82.8
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 3.4e-288 994.6 591 82.7
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 3.4e-288 994.6 601 82.5
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.3e-287 992.6 599 80.6
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 1.3e-287 992.6 566 83.6
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.3e-287 992.6 605 81.2
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.2e-287 991.9 593 80.9
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.2e-287 991.9 593 80.9
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 2.2e-287 991.9 645 77.7
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 6.4e-287 990.3 581 83.6
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 6.4e-287 990.3 585 83.2
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 1.1e-286 989.6 558 85.3
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.4e-286 989.2 583 83.7
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 1.9e-286 988.8 612 80.7
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 1.9e-286 988.8 592 81.8
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 2.4e-286 988.4 558 85.1
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 4.2e-286 987.6 588 81.6
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 5.4e-286 987.3 596 81.2
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 5.4e-286 987.3 596 81.2
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 9.3e-286 986.5 566 84.8
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 1.6e-285 985.7 598 81.8
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 2.1e-285 985.3 596 81.5
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 3.5e-285 984.6 574 82.4
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 7.8e-285 983.4 608 80.3
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 1.0e-284 983.0 600 80.7
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 1.0e-284 983.0 600 81.0
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 1.0e-284 983.0 600 80.7
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 1.0e-284 983.0 600 81.0
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 1.7e-284 982.2 592 80.7
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 1.7e-284 982.2 601 80.5
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 1.7e-284 982.2 527 89.9
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 5.1e-284 980.7 572 83.6
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 5.1e-284 980.7 615 80.2
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 2.5e-283 978.4 572 83.4
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 9.6e-283 976.5 597 81.1
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 2.1e-282 975.3 595 80.8
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 8.1e-282 973.4 645 76.9
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 2.4e-281 971.8 614 78.7
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.7e-277 958.4 560 82.3
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 4.3e-275 951.0 539 88.1
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 1.3e-274 949.5 598 78.4
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 3.7e-274 948.0 591 80.9
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 9.9e-272 939.9 558 81.0
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 1.2e-269 932.9 621 73.4
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 6.0e-269 930.6 603 76.1
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.3e-267 924.9 523 85.9
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 3.1e-265 918.3 577 74.9
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.3e-263 912.9 608 77.5
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.3e-259 898.3 527 83.3
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 5.7e-259 897.5 602 73.1
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 2.0e-256 889.0 600 75.8
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.5e-246 855.5 579 75.0
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 2.3e-244 849.0 619 69.8
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 2.0e-235 819.3 490 84.3
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 9.7e-235 817.0 610 66.1
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 7.0e-233 810.8 564 68.8
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.2e-229 800.0 490 79.8
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.2e-223 779.2 433 87.3
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 1.2e-219 766.9 481 77.3
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.4e-217 760.0 426 86.2
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 7.0e-217 757.7 490 78.8
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 1.7e-215 753.1 550 65.8
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 1.7e-215 753.1 468 80.6
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 3.0e-212 742.3 433 81.8
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.4e-209 732.6 422 84.8
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 8.3e-202 707.6 589 60.4
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 3.3e-198 695.7 403 85.4
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 1.9e-174 616.7 433 72.5
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.6e-165 587.0 603 50.9
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 2.3e-159 566.6 312 88.5
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 1.5e-147 527.3 384 72.1
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.5e-131 474.2 340 73.5
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 2.1e-120 437.2 293 75.1
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 2.1e-104 384.0 277 68.2
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 2.7e-91 340.5 216 75.0
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 2.2e-77 294.3 203 76.8
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 4.1e-76 290.0 155 91.6
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 8.1e-72 275.8 589 32.6
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 2.2e-69 267.7 150 84.7
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 7.6e-62 242.7 131 86.3
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 1.7e-61 241.5 133 84.2
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 4.3e-57 226.9 178 68.5
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 9.0e-55 219.2 126 83.3
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 3.2e-52 210.7 115 86.1
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 3.2e-52 210.7 116 89.7
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 1.6e-51 208.4 114 83.3
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 5.1e-50 203.4 109 90.8
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.0e-46 191.4 105 83.8
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 4.5e-46 190.3 143 66.4
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 4.9e-45 186.8 252 48.4
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 8.4e-45 186.0 115 74.8
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 4.6e-43 180.3 103 84.5
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 4.2e-36 157.1 201 46.8
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.9e-33 148.3 146 58.2
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 9.3e-28 129.4 116 62.1
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 6.1e-27 126.7 70 81.4
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 1.8e-26 125.2 61 96.7
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 4.5e-22 110.5 212 34.9
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 1.1e-20 105.9 56 92.9
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.7e-16 92.0 180 30.0
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 2.4e-15 88.2 67 61.2
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 5.3e-15 87.0 89 58.4
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 1.7e-13 82.0 91 56.0


User provided reference genes

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