Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 0.0e+00 1618.2 811 100.0
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 0.0e+00 1115.9 822 72.5
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 2.8e-311 1071.6 829 69.5
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 1.1e-299 1033.1 826 66.6
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 3.0e-260 902.1 784 63.0
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 8.3e-258 894.0 822 60.1
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 2.4e-257 892.5 822 60.0
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 4.6e-256 888.3 825 59.5
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 3.9e-255 885.2 869 56.7
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 6.2e-253 877.9 828 59.7
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 1.5e-251 873.2 821 57.2
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 5.4e-249 864.8 823 58.6
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 3.9e-247 858.6 823 58.6
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 1.9e-246 856.3 818 57.9
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 2.5e-246 855.9 820 57.9
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 9.5e-246 854.0 823 58.4
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 5.2e-244 848.2 842 58.0
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 4.9e-242 841.6 833 57.6
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 1.9e-241 839.7 820 57.4
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 2.4e-241 839.3 824 56.2
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 4.1e-241 838.6 818 57.9
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 2.3e-239 832.8 816 56.7
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 3.0e-239 832.4 817 58.5
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 6.6e-239 831.2 818 56.6
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.9e-238 829.7 830 56.6
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.5e-238 829.3 829 56.1
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 3.6e-237 825.5 818 56.6
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.2e-235 820.5 832 56.9
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.2e-235 820.5 829 54.9
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 4.4e-235 818.5 818 56.4
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.3e-234 817.0 829 55.1
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 8.4e-234 814.3 819 55.9
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 8.4e-234 814.3 822 55.1
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 1.1e-233 813.9 845 54.3
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 7.1e-233 811.2 810 55.9
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 3.5e-232 808.9 829 56.7
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 3.0e-231 805.8 827 57.4
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 5.1e-231 805.1 599 72.0
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.1e-230 803.9 814 55.5
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 1.1e-230 803.9 836 55.1
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.9e-230 803.1 821 55.9
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.5e-230 802.7 724 60.6
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 5.6e-230 801.6 831 56.2
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 5.6e-230 801.6 822 55.7
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.2e-229 800.4 822 56.3
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 3.6e-229 798.9 837 54.8
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 2.6e-227 792.7 835 55.4
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.9e-225 786.6 818 54.8
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 2.7e-224 782.7 824 55.6
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 8.7e-223 777.7 865 53.1
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 4.3e-222 775.4 833 54.5
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 1.6e-221 773.5 783 58.0
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 2.4e-220 769.6 833 54.3
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 3.1e-220 769.2 829 53.7
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 3.1e-220 769.2 851 53.1
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 1.3e-215 753.8 820 52.7
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 3.9e-215 752.3 821 52.6
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 1.3e-213 747.3 824 54.2
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 2.1e-213 746.5 831 52.8
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 1.1e-212 744.2 862 51.2
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 2.4e-212 743.0 813 53.4
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.9e-210 736.1 819 53.1
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 6.4e-210 734.9 731 57.6
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 4.2e-209 732.3 822 51.7
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 6.0e-208 728.4 827 52.7
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 6.7e-207 724.9 821 52.3
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 1.6e-205 720.3 979 46.8
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 1.3e-202 710.7 806 51.9
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 6.5e-202 708.4 848 50.0
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.1e-201 707.6 788 53.0
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 1.3e-199 700.7 852 48.9
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 6.3e-197 691.8 768 52.3
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 4.5e-195 685.6 670 57.6
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 5.9e-195 685.3 802 51.9
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 1.1e-193 681.0 465 73.5
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 9.4e-193 677.9 825 50.3
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 3.6e-192 676.0 821 48.4
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 3.9e-191 672.5 790 51.6
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 8.8e-191 671.4 693 56.4
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 3.3e-190 669.5 815 49.3
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 1.7e-189 667.2 813 50.1
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 1.4e-188 664.1 820 49.5
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 6.9e-188 661.8 1043 42.4
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 9.1e-188 661.4 673 56.5
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 4.5e-187 659.1 672 56.2
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 1.0e-186 657.9 817 49.1
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 2.2e-186 656.8 820 48.7
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 2.9e-186 656.4 758 51.3
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 6.1e-184 648.7 815 46.4
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 3.9e-183 646.0 670 55.1
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 5.1e-183 645.6 542 63.1
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 6.7e-183 645.2 837 47.2
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.8e-181 639.8 813 47.1
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.3e-178 630.9 756 51.6
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 1.6e-176 624.0 557 61.2
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 3.0e-175 619.8 675 53.8
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 3.9e-175 619.4 681 52.6
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 5.2e-175 619.0 830 48.3
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 1.1e-174 617.8 678 52.8
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 2.0e-174 617.1 690 52.0
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 2.6e-174 616.7 683 52.6
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 3.3e-174 616.3 405 77.3
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 1.6e-171 607.4 826 45.6
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 6.5e-170 602.1 830 46.1
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 1.0e-167 594.7 413 71.2
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 3.3e-166 589.7 817 45.8
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 1.3e-165 587.8 909 42.2
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 3.5e-163 579.7 695 48.3
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 6.6e-154 548.9 358 73.5
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 4.0e-151 539.7 343 74.9
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.2e-149 533.9 642 50.5
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 1.4e-148 531.2 370 69.7
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 2.7e-147 526.9 343 73.8
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 1.2e-144 518.1 370 68.9
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 2.0e-139 500.7 299 81.6
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 8.6e-138 495.4 448 58.0
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 7.3e-137 492.3 358 67.9
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 6.2e-136 489.2 836 40.3
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 6.8e-135 485.7 666 45.9
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 4.4e-134 483.0 377 64.2
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.3e-133 481.5 412 61.4
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 2.2e-133 480.7 498 51.4
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 3.2e-132 476.9 353 65.4
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 2.1e-131 474.2 776 42.8
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 8.1e-128 462.2 408 58.8
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 3.7e-125 453.4 417 55.4
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 1.6e-123 448.0 461 54.9
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 4.7e-120 436.4 382 59.9
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 1.5e-118 431.4 320 68.1
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 6.4e-117 426.0 418 53.3
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 5.6e-113 412.9 616 39.6
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 9.6e-113 412.1 406 53.7
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.6e-112 411.4 278 71.6
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.1e-112 411.0 638 41.8
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.4e-111 408.3 435 50.8
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.4e-108 398.3 437 49.4
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 4.8e-104 383.3 446 48.7
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 2.4e-103 380.9 508 44.9
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 6.0e-99 366.3 433 49.2
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 1.2e-94 352.1 197 87.3
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.0e-94 351.3 239 73.6
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 3.4e-94 350.5 461 48.8
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 5.3e-79 300.1 578 44.3
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.7e-77 295.0 584 36.6
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 3.6e-75 287.3 411 40.9
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 3.0e-74 284.3 471 42.0
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 3.9e-74 283.9 459 43.8
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 8.8e-74 282.7 477 45.5
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.5e-73 282.0 269 55.4
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.0e-70 271.6 190 68.9
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 4.8e-64 250.4 415 41.7
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.9e-61 241.1 183 63.9
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 1.5e-60 238.8 435 35.6
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 8.0e-59 233.0 364 42.0
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 2.6e-57 228.0 322 39.4
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 2.8e-56 224.6 197 60.9
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 3.7e-56 224.2 481 36.2
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 2.0e-54 218.4 180 60.6
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 1.4e-50 205.7 148 65.5
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 5.2e-50 203.8 152 61.8
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.7e-49 200.3 358 38.8
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 5.9e-46 190.3 363 35.0
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 3.2e-44 184.5 100 88.0
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 1.2e-43 182.6 319 35.4
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 3.5e-38 164.5 453 34.9
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 3.8e-37 161.0 473 34.0
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 7.2e-36 156.8 99 73.7
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 1.7e-21 109.0 63 81.0
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 2.3e-21 108.6 258 34.5
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 1.2e-19 102.8 65 75.4
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.8e-19 101.7 122 50.8
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 6.2e-19 100.5 66 74.2
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 8.1e-19 100.1 65 73.8
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 4.1e-15 87.8 229 33.2
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.7e-14 85.1 62 62.9
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 2.6e-09 68.6 52 65.4
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 2.2e-08 65.5 32 87.5
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 8.4e-08 63.5 58 55.2
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.4e-07 62.8 39 79.5
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.4e-07 62.0 47 66.0
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.1e-07 61.2 51 62.7


User provided reference genes

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