Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 1.6e-283 979.2 664 100.0
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 1.1e-220 770.4 630 77.9
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 2.1e-203 713.0 639 72.3
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.3e-197 693.0 635 72.1
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 9.4e-191 671.0 634 69.9
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 1.5e-180 637.1 541 73.4
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 2.0e-180 636.7 656 72.3
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 4.4e-180 635.6 635 69.6
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 4.1e-178 629.0 672 61.0
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 2.9e-176 622.9 638 66.8
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 2.5e-175 619.8 642 64.2
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 2.5e-175 619.8 632 69.6
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 1.2e-174 617.5 632 68.2
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 1.8e-173 613.6 633 64.3
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 1.1e-172 610.9 636 65.6
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 4.4e-172 609.0 633 65.9
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 9.7e-172 607.8 636 67.8
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 9.7e-172 607.8 634 65.8
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 2.2e-171 606.7 645 62.6
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.1e-170 604.4 634 67.2
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 1.6e-169 600.5 636 66.2
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.7e-168 597.0 565 72.2
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 5.0e-168 595.5 633 62.9
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 3.6e-166 589.3 531 64.0
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 3.6e-166 589.3 599 60.6
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 1.0e-165 587.8 491 72.7
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 5.2e-165 585.5 491 70.3
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 1.5e-164 583.9 631 61.0
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 5.7e-164 582.0 637 67.3
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 3.7e-163 579.3 663 64.7
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 7.0e-162 575.1 543 62.4
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 9.1e-162 574.7 487 71.3
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 1.6e-161 573.9 633 58.6
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 3.5e-161 572.8 487 72.1
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 5.9e-161 572.0 488 68.0
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 1.0e-160 571.2 490 71.0
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.3e-160 570.9 463 75.4
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 2.9e-160 569.7 487 72.1
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 5.0e-160 568.9 627 60.1
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 8.5e-160 568.2 490 70.6
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 1.1e-159 567.8 639 62.1
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 9.4e-159 564.7 688 58.4
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 9.4e-159 564.7 485 68.7
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.6e-158 563.9 486 64.0
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.6e-158 563.9 639 62.1
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.6e-158 563.9 639 61.8
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 2.1e-158 563.5 490 72.7
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 4.7e-158 562.4 631 60.9
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 5.2e-157 558.9 486 64.2
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 6.8e-157 558.5 631 55.5
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 3.4e-156 556.2 479 69.7
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 7.5e-156 555.1 488 68.2
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 9.8e-156 554.7 460 73.7
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 9.8e-156 554.7 634 60.7
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 4.9e-155 552.4 547 72.0
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 6.3e-155 552.0 634 60.9
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 1.4e-154 550.8 488 62.9
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 1.8e-154 550.4 630 62.9
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 3.5e-153 546.2 485 67.0
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 1.7e-152 543.9 480 71.0
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 8.6e-152 541.6 393 73.3
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 1.5e-151 540.8 492 66.3
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 1.9e-151 540.4 640 56.7
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 5.6e-151 538.9 486 70.4
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 2.1e-150 537.0 477 68.8
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 4.7e-150 535.8 491 66.8
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 8.0e-150 535.0 431 71.5
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 1.0e-149 534.6 638 61.9
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 1.8e-149 533.9 489 70.3
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 3.4e-148 529.6 487 63.0
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 3.4e-148 529.6 397 71.8
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 1.7e-147 527.3 627 54.7
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 6.4e-147 525.4 538 58.7
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.8e-146 523.9 634 52.1
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 1.0e-144 518.1 397 70.3
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 3.0e-144 516.5 467 66.2
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 1.9e-143 513.8 635 61.4
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 4.3e-143 512.7 396 68.4
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 9.5e-143 511.5 475 68.0
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 1.2e-142 511.1 464 62.3
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 2.8e-142 510.0 410 66.3
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 6.8e-141 505.4 475 68.4
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 2.6e-140 503.4 636 57.2
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 5.6e-135 485.7 550 54.7
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 7.3e-135 485.3 579 54.9
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 1.7e-131 474.2 488 58.2
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 4.9e-131 472.6 522 61.9
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 2.3e-128 463.8 370 74.9
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 1.9e-127 460.7 352 69.0
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 7.3e-127 458.8 491 61.3
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 6.4e-123 445.7 660 57.6
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 2.1e-121 440.7 411 59.4
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 2.5e-119 433.7 640 58.3
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 9.6e-119 431.8 647 59.0
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 1.2e-118 431.4 534 59.2
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.4e-117 427.2 387 59.4
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 8.9e-117 425.2 644 56.4
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 8.9e-117 425.2 397 58.7
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 3.2e-114 416.8 650 57.4
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 4.2e-114 416.4 634 53.2
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 5.4e-114 416.0 636 55.2
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 7.1e-114 415.6 637 55.7
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 9.3e-114 415.2 628 44.9
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 3.5e-113 413.3 643 54.1
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 2.8e-110 403.7 495 57.0
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 4.0e-109 399.8 630 56.7
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 6.9e-109 399.1 495 57.2
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 1.6e-105 387.9 526 56.8
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 2.3e-104 384.0 466 57.5
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 6.2e-102 375.9 310 75.5
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 7.6e-92 342.4 354 54.8
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.9e-91 340.5 288 60.4
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 9.3e-90 335.5 338 55.6
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 6.0e-89 332.8 364 51.9
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 7.4e-87 325.9 315 57.8
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 2.9e-83 313.9 417 51.6
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.8e-83 313.5 371 55.8
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.6e-81 308.1 371 55.5
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.6e-81 308.1 371 55.5
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.7e-81 307.4 371 55.3
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 2.0e-76 291.2 480 44.0
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 5.5e-74 283.1 303 52.5
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 4.6e-73 280.0 479 42.8
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 1.8e-72 278.1 396 45.7
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 2.3e-64 251.1 295 49.8
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 1.7e-59 235.0 344 44.2
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 3.0e-56 224.2 269 63.6
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 3.3e-55 220.7 481 39.7
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 2.8e-46 191.0 169 62.7
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 1.8e-40 171.8 136 72.1
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 1.3e-38 165.6 103 76.7
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 3.5e-36 157.5 283 39.6
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 5.0e-35 153.7 116 68.1
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 1.2e-28 132.5 255 38.4
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 1.5e-26 125.6 365 30.4
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 2.6e-23 114.8 258 31.0
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 8.3e-22 109.8 117 55.6
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 2.0e-20 105.1 113 58.4
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 3.3e-18 97.8 61 77.0
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 4.3e-18 97.4 80 58.8
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 1.5e-15 89.0 53 77.4
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 1.7e-11 75.5 54 68.5
Cpa.g.c34487 Carica papaya HOM05D004839 ORTHO05D006012 6.2e-09 67.0 47 72.3
Gorai.011G032300 Gossypium raimondii HOM05D004839 ORTHO05D006012 1.1e-08 66.2 137 51.1
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 5.2e-08 63.9 80 51.2
Oeu047994.1 Olea europaea HOM05D004839 ORTHO05D290566 5.2e-08 63.9 109 40.4
FAN18G1977 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.5e-07 62.4 42 83.3


User provided reference genes

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