Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 7.4e-203 710.3 354 100.0
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 2.4e-137 492.7 283 87.3
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 2.4e-137 492.7 283 87.3
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 9.2e-137 490.7 284 86.3
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 1.6e-136 490.0 286 85.3
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 2.7e-136 489.2 292 84.6
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 7.8e-136 487.6 282 85.1
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.5e-134 483.4 282 85.1
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 1.9e-134 483.0 285 85.3
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 3.3e-134 482.3 274 87.6
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 4.3e-134 481.9 285 84.9
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 5.6e-134 481.5 287 83.3
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 1.2e-133 480.3 287 84.0
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 1.2e-133 480.3 275 86.9
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 2.1e-133 479.6 296 81.4
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 2.8e-133 479.2 289 83.0
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 2.8e-133 479.2 290 83.8
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 4.7e-133 478.4 302 81.1
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 1.1e-132 477.2 274 86.5
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 1.1e-132 477.2 298 80.5
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 1.1e-132 477.2 273 85.7
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 1.1e-132 477.2 289 82.0
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.4e-132 476.9 282 84.0
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 1.4e-132 476.9 274 86.9
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 6.9e-132 474.6 273 86.1
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 6.9e-132 474.6 291 83.2
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.2e-131 473.8 298 81.2
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.5e-131 473.4 287 83.3
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 1.5e-131 473.4 301 80.1
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 2.0e-131 473.0 291 82.1
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.6e-131 472.6 287 83.3
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 4.4e-131 471.9 296 80.7
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 7.6e-131 471.1 280 81.8
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.7e-130 469.9 303 78.9
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.9e-130 469.2 296 80.7
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 2.9e-130 469.2 287 82.6
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 3.8e-130 468.8 273 84.6
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 8.4e-130 467.6 273 85.0
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 8.4e-130 467.6 282 83.3
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 1.1e-129 467.2 304 77.3
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 1.9e-129 466.5 324 75.6
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 2.4e-129 466.1 283 83.4
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 2.4e-129 466.1 304 77.0
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 3.2e-129 465.7 326 74.8
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 5.4e-129 464.9 285 81.4
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 9.3e-129 464.2 280 81.4
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 1.6e-128 463.4 286 83.9
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.6e-128 463.4 298 78.9
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.7e-128 462.6 276 84.1
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 4.6e-128 461.8 284 80.3
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 7.8e-128 461.1 273 83.9
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.0e-127 460.7 283 80.6
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 1.3e-127 460.3 290 83.4
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 1.7e-127 459.9 303 77.9
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 3.0e-127 459.1 298 79.9
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 3.9e-127 458.8 274 83.9
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.5e-126 456.8 317 75.1
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 1.5e-126 456.8 269 83.6
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 3.3e-126 455.7 293 79.2
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 5.6e-126 454.9 289 79.9
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 5.6e-126 454.9 322 73.9
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 9.6e-126 454.1 297 78.5
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 2.1e-125 453.0 293 76.5
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 2.1e-125 453.0 274 81.4
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 2.1e-125 453.0 280 80.7
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 4.8e-125 451.8 273 82.1
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 4.8e-125 451.8 273 82.1
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 4.8e-125 451.8 280 80.4
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 1.2e-123 447.2 284 79.6
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 1.2e-123 447.2 293 76.8
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 2.6e-123 446.0 290 75.9
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 4.5e-123 445.3 275 81.1
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 7.6e-123 444.5 296 78.4
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 2.9e-122 442.6 284 78.5
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 1.4e-121 440.3 302 76.5
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 1.9e-121 439.9 275 80.7
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 2.4e-121 439.5 293 79.9
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 7.1e-121 438.0 291 74.9
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 7.1e-121 438.0 291 74.9
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 7.1e-121 438.0 292 74.3
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 1.2e-120 437.2 273 78.0
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 1.2e-120 437.2 273 77.3
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 1.6e-120 436.8 323 73.1
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 2.7e-120 436.0 298 73.8
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 3.5e-120 435.6 284 76.1
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 6.0e-120 434.9 258 83.3
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 6.0e-120 434.9 291 76.6
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 6.0e-120 434.9 292 74.7
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 6.0e-120 434.9 300 76.3
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 7.9e-120 434.5 277 79.4
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 7.9e-120 434.5 277 79.4
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 1.3e-119 433.7 295 77.3
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 6.7e-119 431.4 273 78.0
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.1e-118 430.6 291 74.6
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.1e-118 430.6 291 74.6
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 4.3e-118 428.7 282 78.7
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 5.6e-118 428.3 282 75.2
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 9.6e-118 427.6 308 73.7
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.6e-117 426.8 283 74.6
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 8.1e-117 424.5 273 74.7
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 2.4e-116 422.9 309 70.2
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 9.0e-116 421.0 334 68.0
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.2e-115 420.6 280 75.0
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 2.9e-114 416.0 278 73.7
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 1.1e-113 414.1 284 71.5
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 4.6e-112 408.7 276 73.2
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.9e-106 389.4 262 72.9
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 1.4e-105 387.1 233 83.3
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 9.3e-105 384.4 223 84.8
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 3.0e-103 379.4 257 73.9
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 4.5e-99 365.5 276 71.4
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.9e-97 360.1 291 67.7
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 1.9e-97 360.1 255 72.5
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 3.2e-97 359.4 293 67.2
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 5.5e-97 358.6 290 66.9
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.2e-90 336.7 248 67.7
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 5.5e-89 332.0 205 82.0
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 7.2e-89 331.6 282 62.4
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 9.4e-89 331.3 280 61.8
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 3.9e-87 325.9 286 60.5
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.1e-86 324.3 185 85.4
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 2.0e-86 323.6 225 72.9
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.7e-85 320.5 244 67.2
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 1.7e-85 320.5 266 64.3
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 1.4e-84 317.4 306 57.8
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 2.1e-80 303.5 190 80.5
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.4e-78 295.0 202 70.3
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 2.8e-77 293.1 181 81.8
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 5.3e-76 288.9 262 58.4
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 9.1e-76 288.1 181 81.2
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 2.4e-68 263.5 190 73.7
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 4.5e-67 259.2 246 61.8
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.8e-56 223.4 147 78.9
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.1e-48 197.2 110 85.5
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 6.1e-48 195.7 113 81.4
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.8e-47 194.1 108 86.1
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 3.9e-42 176.4 106 79.2
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 6.6e-42 175.6 115 75.7
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 1.9e-41 174.1 116 78.4
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 2.0e-38 164.1 268 38.4
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 3.4e-38 163.3 136 64.7
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.2e-35 154.8 95 78.9
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 1.9e-33 147.5 94 75.5
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 9.5e-33 145.2 263 35.0
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 2.8e-32 143.7 101 73.3
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 5.2e-31 139.4 104 67.3
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 2.6e-30 137.1 183 44.3
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 2.6e-30 137.1 254 34.3
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 3.4e-30 136.7 183 43.2
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 3.4e-30 136.7 230 41.7
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 1.7e-29 134.4 177 44.1
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 2.2e-29 134.0 102 67.6
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 8.3e-29 132.1 115 60.9
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 8.3e-29 132.1 115 60.9
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 1.9e-28 131.0 115 60.9
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 5.4e-28 129.4 66 92.4
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 2.1e-27 127.5 115 60.0
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 2.7e-27 127.1 115 60.0
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.7e-26 124.4 255 31.8
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 5.2e-23 112.8 152 40.1
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 5.8e-22 109.4 152 40.1
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 7.6e-22 109.0 152 40.1
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 8.4e-21 105.5 142 43.0
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 8.7e-18 95.5 54 88.9
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 2.0e-14 84.3 57 68.4
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 1.1e-12 78.6 46 76.1


User provided reference genes

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