Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 1.2e-112 409.8 200 100.0
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 3.2e-70 268.9 162 79.0
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 2.0e-64 249.6 157 74.5
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 3.8e-63 245.4 159 73.0
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 6.5e-63 244.6 152 75.0
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 6.5e-63 244.6 161 73.3
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 1.5e-62 243.4 163 69.3
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 1.9e-62 243.0 161 70.2
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 2.5e-62 242.7 154 72.7
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 2.1e-61 239.6 156 72.4
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 1.4e-60 236.9 154 68.2
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 9.7e-59 230.7 155 70.3
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 4.8e-58 228.4 154 68.2
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 1.1e-57 227.3 160 66.2
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 1.4e-57 226.9 155 68.4
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 1.8e-57 226.5 150 70.7
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 7.0e-57 224.6 155 67.7
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 9.1e-57 224.2 152 65.8
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 9.1e-57 224.2 158 65.2
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 2.0e-56 223.0 155 65.2
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 2.0e-56 223.0 153 68.6
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 4.5e-56 221.9 157 65.6
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 5.9e-56 221.5 155 67.7
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 1.0e-55 220.7 156 67.3
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 1.9e-54 216.5 161 61.5
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 2.5e-54 216.1 154 63.6
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 3.2e-54 215.7 162 62.3
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 4.2e-54 215.3 155 65.2
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 5.5e-54 214.9 157 63.1
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 9.4e-54 214.2 155 65.8
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 3.6e-53 212.2 157 62.4
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 6.1e-53 211.5 155 63.9
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 8.0e-53 211.1 148 64.2
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 2.3e-52 209.5 148 62.8
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 4.0e-52 208.8 153 62.7
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 6.8e-52 208.0 157 63.7
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 6.8e-52 208.0 162 61.7
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 8.8e-52 207.6 160 60.0
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 1.2e-51 207.2 147 63.9
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 1.5e-51 206.8 154 66.9
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 1.5e-51 206.8 166 57.2
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 1.5e-51 206.8 151 61.6
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 2.0e-51 206.5 146 63.7
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 2.0e-51 206.5 155 63.9
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 3.4e-51 205.7 150 66.7
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 3.4e-51 205.7 175 55.4
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 4.4e-51 205.3 155 64.5
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 9.8e-51 204.1 151 63.6
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 1.7e-50 203.4 156 59.6
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 3.7e-50 202.2 144 62.5
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 8.3e-50 201.1 151 58.3
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 1.4e-49 200.3 153 60.1
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 1.4e-49 200.3 158 58.2
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 1.8e-49 199.9 159 59.1
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 2.4e-49 199.5 159 61.0
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 4.1e-49 198.7 153 59.5
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 5.4e-49 198.4 153 56.9
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 9.1e-49 197.6 158 58.2
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 1.2e-48 197.2 154 59.7
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 4.5e-48 195.3 158 58.2
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 1.0e-47 194.1 160 56.2
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 1.7e-47 193.4 158 52.5
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 3.8e-47 192.2 153 53.6
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.2e-45 187.2 155 62.6
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 2.1e-45 186.4 153 53.6
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 2.8e-45 186.0 155 56.8
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 3.6e-45 185.7 159 56.0
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 8.0e-45 184.5 152 55.9
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 1.4e-44 183.7 153 52.9
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 1.4e-44 183.7 150 56.7
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 5.2e-44 181.8 151 55.0
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 1.2e-43 180.6 151 55.6
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 2.0e-43 179.9 152 54.6
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 2.0e-43 179.9 157 54.8
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 2.6e-43 179.5 153 51.0
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 3.4e-43 179.1 159 54.1
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 4.4e-43 178.7 151 53.6
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 4.4e-43 178.7 160 59.4
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 7.5e-43 177.9 158 53.8
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 7.5e-43 177.9 152 54.6
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 9.8e-43 177.6 149 55.0
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 6.3e-42 174.9 158 54.4
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 8.3e-42 174.5 152 53.9
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 1.8e-41 173.3 151 54.3
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 1.8e-41 173.3 145 59.3
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 5.4e-41 171.8 152 52.6
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 7.0e-41 171.4 149 51.0
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 7.0e-41 171.4 149 51.0
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 1.6e-40 170.2 121 62.0
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 2.0e-40 169.9 149 51.7
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 2.0e-40 169.9 149 51.7
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 2.3e-39 166.4 149 49.7
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 1.9e-38 163.3 142 54.2
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 2.8e-37 159.5 151 46.4
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 2.8e-37 159.5 149 55.0
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 1.0e-36 157.5 157 47.8
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 2.3e-36 156.4 163 44.2
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 4.0e-36 155.6 122 62.3
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 4.0e-36 155.6 155 50.3
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 4.0e-36 155.6 155 49.7
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 8.9e-36 154.5 148 48.0
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 8.9e-36 154.5 151 50.3
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 3.4e-35 152.5 162 48.8
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 9.8e-35 151.0 162 48.8
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 5.0e-31 138.7 153 43.1
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 6.6e-31 138.3 154 41.6
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 3.3e-30 136.0 114 55.3
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 2.1e-29 133.3 158 45.6
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 4.0e-28 129.0 148 42.6
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 2.6e-27 126.3 147 46.9
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 2.6e-19 99.8 147 37.4
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 1.4e-17 94.0 62 69.4
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 2.1e-13 80.1 115 34.8
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 1.4e-12 77.4 131 35.9
Sc05g0001360 Simmondsia chinensis HOM05D007082 ORTHO05D008895 2.9e-10 69.7 141 36.2
Peaxi162Scf01115g00007 Petunia axillaris HOM05D007082 ORTHO05D008895 5.4e-09 65.5 58 55.2
PGSC0003DMG400045025 Solanum tuberosum HOM05D007082 ORTHO05D008895 2.7e-08 63.2 109 35.8
AL4G14970 Arabidopsis lyrata HOM05D002728 ORTHO05D002874 1.1e-06 57.8 122 27.9
DCAR_000664 Daucus carota HOM05D002728 ORTHO05D002874 1.9e-06 57.0 132 28.0
BcaC02g08447 Brassica carinata HOM05D002728 ORTHO05D002874 4.3e-06 55.8 142 24.6
Sp4g03490 Schrenkiella parvula HOM05D002728 ORTHO05D002874 4.3e-06 55.8 127 26.0
Lj1g0002656 Lotus japonicus HOM05D002728 ORTHO05D002874 5.6e-06 55.5 142 26.1
TAR626G0658 Trochodendron aralioides HOM05D002728 ORTHO05D002874 5.6e-06 55.5 122 28.7
A04p18810 Brassica napus HOM05D002728 ORTHO05D002874 7.3e-06 55.1 135 25.9
AUR62009043 Chenopodium quinoa HOM05D002728 ORTHO05D002874 7.3e-06 55.1 125 30.4
AUR62020619 Chenopodium quinoa HOM05D002728 ORTHO05D002874 7.3e-06 55.1 125 30.4
AUR62038763 Chenopodium quinoa HOM05D002728 ORTHO05D002874 7.3e-06 55.1 125 30.4
Thhalv10000282m.g Eutrema salsugineum HOM05D002728 ORTHO05D002874 7.3e-06 55.1 132 25.8
Atru.chr7.2627 Acer truncatum HOM05D002728 ORTHO05D002874 9.6e-06 54.7 127 26.0
BcaB06g27981 Brassica carinata HOM05D002728 ORTHO05D002874 9.6e-06 54.7 132 25.8


User provided reference genes

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