Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 1.5e-100 369.8 225 100.0
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 6.6e-88 327.8 226 91.6
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 1.6e-86 323.2 225 80.0
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 2.6e-84 315.8 230 76.1
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 3.4e-84 315.5 230 77.0
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 3.4e-84 315.5 230 80.9
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.4e-84 315.5 225 82.2
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 4.4e-84 315.1 230 80.4
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 5.8e-84 314.7 230 79.6
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 1.3e-83 313.5 231 81.4
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.3e-83 313.5 230 77.0
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 1.7e-83 313.2 230 75.7
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 1.7e-83 313.2 225 77.3
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.9e-83 312.4 231 77.1
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.9e-83 312.4 231 77.1
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 3.7e-83 312.0 230 81.7
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 4.9e-83 311.6 230 83.0
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 4.9e-83 311.6 231 77.1
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 4.9e-83 311.6 229 78.6
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 6.4e-83 311.2 230 76.5
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 6.4e-83 311.2 225 72.0
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 1.4e-82 310.1 230 79.1
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 1.9e-82 309.7 229 80.3
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 3.2e-82 308.9 225 77.3
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 3.2e-82 308.9 232 80.2
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 4.1e-82 308.5 230 82.6
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 4.1e-82 308.5 229 82.5
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 4.1e-82 308.5 230 80.0
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 4.1e-82 308.5 230 76.1
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 7.1e-82 307.8 231 79.7
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 7.1e-82 307.8 230 76.1
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 7.1e-82 307.8 249 71.1
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 9.2e-82 307.4 231 81.4
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 9.2e-82 307.4 231 79.7
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 1.2e-81 307.0 230 80.9
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 1.2e-81 307.0 221 86.9
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 3.5e-81 305.4 227 83.7
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 6.0e-81 304.7 230 74.8
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.0e-81 304.7 225 86.7
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 1.0e-80 303.9 230 80.4
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 1.0e-80 303.9 230 74.8
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.0e-80 303.9 230 74.3
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 1.3e-80 303.5 233 78.5
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 1.3e-80 303.5 229 81.7
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 1.7e-80 303.1 230 77.8
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 2.3e-80 302.8 232 81.9
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 3.9e-80 302.0 230 78.3
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.9e-80 302.0 225 86.2
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 5.1e-80 301.6 231 80.1
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 6.6e-80 301.2 230 79.6
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 8.6e-80 300.8 230 75.7
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.1e-79 300.4 235 74.9
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.9e-79 299.7 225 85.8
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 1.9e-79 299.7 230 72.2
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 2.5e-79 299.3 232 78.4
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 3.3e-79 298.9 229 74.7
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.3e-79 298.9 225 85.3
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 3.3e-79 298.9 231 78.4
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 5.6e-79 298.1 233 74.2
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 7.3e-79 297.7 232 72.8
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 7.3e-79 297.7 231 75.8
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 1.6e-78 296.6 225 76.0
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 1.6e-78 296.6 231 74.9
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 2.1e-78 296.2 230 73.9
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 2.8e-78 295.8 231 72.3
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 2.8e-78 295.8 231 72.3
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.8e-78 295.8 233 76.0
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 3.6e-78 295.4 230 79.6
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 4.7e-78 295.0 232 75.0
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.7e-78 295.0 233 75.1
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.7e-78 295.0 232 75.0
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 4.7e-78 295.0 235 75.7
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 6.2e-78 294.7 227 83.3
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 6.2e-78 294.7 230 68.7
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.4e-77 293.5 225 76.9
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 4.0e-77 292.0 231 71.4
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 5.2e-77 291.6 232 71.6
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 6.8e-77 291.2 230 73.5
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 8.9e-77 290.8 233 76.4
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 8.9e-77 290.8 232 72.4
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 8.9e-77 290.8 236 77.5
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 1.2e-76 290.4 231 71.4
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 1.2e-76 290.4 243 71.2
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 1.2e-76 290.4 225 83.6
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 1.2e-76 290.4 232 71.1
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 1.2e-76 290.4 235 72.8
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.5e-76 290.0 235 79.1
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 3.4e-76 288.9 232 72.0
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 3.4e-76 288.9 232 72.0
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 3.4e-76 288.9 230 80.0
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 3.4e-76 288.9 232 73.3
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 4.4e-76 288.5 232 71.6
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 4.4e-76 288.5 233 72.1
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 4.4e-76 288.5 233 72.1
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 4.4e-76 288.5 230 69.1
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 4.4e-76 288.5 231 79.7
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 5.8e-76 288.1 232 71.6
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 7.6e-76 287.7 232 72.4
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 7.6e-76 287.7 232 72.0
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 7.6e-76 287.7 232 72.4
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 7.6e-76 287.7 232 72.4
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 7.6e-76 287.7 232 70.7
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 9.9e-76 287.3 232 73.7
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 1.3e-75 287.0 231 70.6
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 1.7e-75 286.6 230 72.2
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 3.7e-75 285.4 229 68.6
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 1.1e-74 283.9 232 71.1
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 1.1e-74 283.9 232 71.1
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 1.9e-74 283.1 232 78.0
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 3.2e-74 282.3 230 73.0
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 4.1e-74 282.0 233 69.1
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 7.1e-74 281.2 230 76.5
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 7.1e-74 281.2 232 75.9
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.6e-73 280.0 232 68.5
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 2.7e-73 279.3 225 70.2
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 1.0e-72 277.3 230 77.4
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.0e-72 277.3 232 75.4
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 1.3e-72 276.9 232 69.0
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 2.3e-72 276.2 233 76.8
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 2.3e-72 276.2 233 76.8
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 2.5e-71 272.7 243 62.1
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 9.6e-71 270.8 233 69.5
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 4.7e-70 268.5 244 61.5
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 1.1e-69 267.3 230 68.7
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.8e-69 266.5 284 54.6
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 2.4e-69 266.2 230 68.7
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 2.0e-68 263.1 233 63.5
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 7.6e-68 261.2 229 76.4
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 9.9e-68 260.8 217 75.1
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 1.3e-67 260.4 227 69.6
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 3.8e-67 258.8 230 76.5
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 7.1e-66 254.6 230 75.2
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 7.1e-66 254.6 271 64.6
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 9.3e-66 254.2 233 63.9
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 4.6e-65 251.9 233 65.2
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 1.3e-62 243.8 229 67.2
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 1.8e-61 240.0 225 64.0
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 3.5e-57 225.7 144 93.8
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 8.7e-56 221.1 189 72.5
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.6e-54 216.9 247 57.5
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 6.9e-53 211.5 234 62.0
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.2e-50 202.2 226 59.7
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 5.5e-50 201.8 187 67.4
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.0e-48 197.6 107 94.4
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.3e-48 197.2 107 93.5
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.5e-47 193.7 107 92.5
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.6e-46 190.3 120 81.7
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.8e-45 186.8 149 74.5
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 1.2e-44 184.1 240 51.7
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 2.0e-44 183.3 120 79.2
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 3.4e-44 182.6 232 53.9
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.8e-44 181.8 119 79.0
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.2e-43 179.9 187 64.7
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 2.3e-40 169.9 150 76.7
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 7.6e-36 154.8 120 70.0
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 3.9e-32 142.5 138 69.6
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.8e-30 136.3 199 54.8
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 1.1e-29 134.4 93 71.0
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 3.1e-29 132.9 94 69.1
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 2.6e-28 129.8 95 68.4
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.9e-26 123.6 67 85.1
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 3.6e-25 119.4 228 43.4
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 4.6e-25 119.0 67 82.1
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 2.5e-23 113.2 176 49.4
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 4.8e-22 109.0 96 62.5
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 4.8e-22 109.0 222 37.4
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 2.4e-21 106.7 87 62.1
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 5.3e-21 105.5 68 76.5
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 1.3e-19 100.9 95 58.9
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 6.7e-16 88.6 44 95.5
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.3e-14 84.3 73 68.5
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 4.1e-13 79.3 53 73.6
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 2.5e-10 70.1 83 44.6
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 4.7e-09 65.9 71 45.1
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.0e-08 62.8 85 48.2
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.3e-06 57.8 91 44.0


User provided reference genes

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