Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 1.6e-242 842.4 447 100.0
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 3.6e-194 681.8 454 80.0
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 5.7e-192 674.5 451 79.8
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 1.3e-191 673.3 447 78.3
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 2.2e-188 662.5 447 78.7
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 3.6e-186 655.2 447 77.4
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 3.6e-186 655.2 448 78.3
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 8.0e-186 654.1 448 78.3
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 1.4e-185 653.3 448 78.3
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 6.7e-185 651.0 455 75.8
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 1.5e-184 649.8 460 75.4
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 9.7e-184 647.1 450 77.3
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 2.2e-183 646.0 450 75.6
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 3.5e-181 638.6 453 75.9
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.3e-180 636.7 452 75.9
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 3.8e-180 635.2 447 75.2
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 1.2e-178 630.2 454 73.6
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 6.8e-177 624.4 454 72.2
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 8.8e-177 624.0 456 73.2
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 8.8e-177 624.0 450 73.1
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 1.5e-176 623.2 453 73.7
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 9.8e-176 620.5 456 73.2
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 2.8e-175 619.0 443 74.5
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 2.8e-175 619.0 455 73.2
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.1e-174 617.1 461 71.8
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 1.2e-173 613.6 447 72.7
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 1.6e-173 613.2 447 72.7
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 2.7e-173 612.5 456 74.3
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 5.9e-173 611.3 448 73.4
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 7.7e-173 610.9 453 73.1
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 7.7e-173 610.9 459 71.9
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 1.0e-172 610.5 452 72.3
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.7e-172 609.8 449 73.1
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 1.1e-171 607.1 453 72.4
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 1.5e-171 606.7 448 72.8
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 1.9e-171 606.3 451 71.8
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 2.8e-170 602.4 461 71.4
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 6.1e-170 601.3 451 71.0
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 6.1e-170 601.3 455 71.0
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 1.8e-169 599.7 453 70.6
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 1.2e-168 597.0 452 70.8
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.2e-168 597.0 451 72.9
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 1.5e-168 596.7 451 71.0
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.0e-168 596.3 451 72.9
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 2.6e-168 595.9 451 71.4
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 7.5e-168 594.3 452 71.7
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 7.5e-168 594.3 452 71.7
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.3e-167 593.6 443 72.7
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.3e-167 593.6 454 71.4
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 2.2e-167 592.8 443 72.7
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 4.9e-167 591.7 458 71.0
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 8.3e-167 590.9 456 72.6
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 8.3e-167 590.9 443 71.8
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.8e-166 589.7 443 72.2
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 2.4e-166 589.3 445 71.9
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 7.0e-166 587.8 451 72.3
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 2.7e-165 585.9 454 67.8
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 4.5e-165 585.1 456 69.3
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 7.8e-165 584.3 459 69.5
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 1.0e-164 583.9 463 69.3
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 1.0e-164 583.9 450 69.3
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 6.6e-164 581.3 463 69.5
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 8.6e-164 580.9 454 72.0
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 4.3e-163 578.6 456 68.9
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 4.3e-163 578.6 456 68.9
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 7.3e-163 577.8 420 71.2
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 2.1e-162 576.2 441 69.4
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 6.1e-162 574.7 427 72.6
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 6.1e-162 574.7 376 79.0
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.8e-161 573.2 455 68.8
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 6.8e-161 571.2 450 68.7
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 8.9e-161 570.9 453 66.9
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 1.2e-160 570.5 451 67.4
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.5e-160 570.1 453 67.3
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 6.4e-159 564.7 449 67.3
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 6.4e-159 564.7 452 67.7
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 8.3e-159 564.3 452 66.6
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 8.3e-159 564.3 450 66.4
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 8.3e-159 564.3 448 66.5
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 3.2e-158 562.4 451 67.0
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 4.1e-158 562.0 341 83.3
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 4.1e-158 562.0 448 66.5
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 9.2e-158 560.8 455 66.2
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.1e-155 553.9 458 67.7
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 1.2e-154 550.4 447 65.5
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 4.7e-154 548.5 447 65.3
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 1.8e-153 546.6 452 65.9
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 1.8e-153 546.6 452 65.9
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 1.8e-153 546.6 452 65.9
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.8e-153 546.6 455 64.8
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.8e-153 546.6 455 64.8
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 4.0e-153 545.4 449 66.4
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 1.2e-152 543.9 450 65.1
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 7.5e-152 541.2 447 63.5
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 4.9e-151 538.5 447 63.5
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 8.3e-151 537.7 399 70.9
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 3.2e-150 535.8 447 63.5
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 4.1e-150 535.4 362 77.1
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.7e-143 513.5 365 71.0
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 7.8e-141 504.6 308 84.1
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.7e-140 503.4 451 61.9
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.7e-138 495.4 450 62.2
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 7.8e-133 478.0 457 59.5
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 2.3e-132 476.5 311 77.5
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 2.0e-128 463.4 290 82.8
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 3.2e-126 456.1 307 77.9
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 3.2e-126 456.1 282 84.4
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 4.2e-118 429.1 390 60.5
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 2.5e-115 419.9 373 61.7
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 7.4e-115 418.3 403 58.3
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 3.1e-113 412.9 376 59.3
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 9.9e-112 407.9 295 71.2
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 8.4e-111 404.8 364 59.6
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 6.0e-109 398.7 280 70.7
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.8e-108 397.1 389 55.3
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 4.2e-102 375.9 284 71.5
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.5e-99 367.5 379 55.1
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 4.3e-99 365.9 320 61.2
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 8.2e-98 361.7 369 55.3
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.2e-94 349.7 367 55.0
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 1.6e-93 347.4 339 56.3
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 6.7e-92 342.0 384 52.1
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 4.5e-88 329.3 355 51.5
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 5.7e-83 312.4 390 46.9
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 6.3e-82 308.9 381 50.4
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 5.2e-76 289.3 243 63.8
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 3.1e-65 253.4 332 46.7
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 3.6e-53 213.4 150 72.0
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 7.8e-48 195.7 345 39.7
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.5e-40 170.2 164 55.5
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.0e-40 169.5 112 75.0
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 1.1e-38 165.2 222 45.9
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.3e-34 149.1 92 78.3
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.6e-32 144.8 114 64.0
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 4.6e-32 143.3 137 54.7
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.8e-32 142.5 171 51.5
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 5.4e-25 119.8 73 86.3
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.1e-21 105.9 87 69.0
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 6.6e-15 86.3 75 54.7
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.9e-14 84.7 149 38.3
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.6e-11 72.8 74 59.5
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 1.6e-08 65.1 153 36.6


User provided reference genes

Program Settings