Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 0.0e+00 1345.9 651 100.0
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 0.0e+00 1179.9 651 86.8
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 0.0e+00 1164.8 664 84.0
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 0.0e+00 1134.4 677 81.4
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 0.0e+00 1122.1 654 82.0
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 0.0e+00 1110.5 656 80.8
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 0.0e+00 1101.7 708 76.0
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 0.0e+00 1101.3 658 80.2
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 0.0e+00 1100.1 657 80.8
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 0.0e+00 1097.8 657 80.8
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 0.0e+00 1094.7 657 80.2
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 0.0e+00 1094.0 654 80.0
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 0.0e+00 1091.3 650 80.0
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 0.0e+00 1089.3 656 79.6
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 0.0e+00 1087.0 654 79.1
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 0.0e+00 1086.2 653 79.5
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 0.0e+00 1083.2 654 78.9
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 0.0e+00 1080.5 652 79.6
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 0.0e+00 1080.5 655 79.8
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 0.0e+00 1078.5 654 79.1
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 3.4e-310 1067.8 652 79.1
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 5.7e-310 1067.0 655 79.4
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 1.7e-309 1065.4 652 79.0
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.9e-309 1064.7 655 78.3
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 2.9e-309 1064.7 656 77.4
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.1e-308 1062.8 657 78.4
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.1e-308 1062.8 657 78.4
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 5.4e-308 1060.4 655 78.0
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 1.6e-307 1058.9 656 78.2
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 1.6e-307 1058.9 654 78.9
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 2.7e-307 1058.1 652 78.1
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 3.5e-307 1057.7 657 78.1
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 5.9e-307 1057.0 652 78.1
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 5.0e-306 1053.9 653 78.4
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 8.6e-306 1053.1 657 77.0
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 8.6e-306 1053.1 655 77.6
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 1.9e-305 1052.0 655 77.4
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 4.3e-305 1050.8 655 76.6
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 7.3e-305 1050.0 655 76.5
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 9.5e-305 1049.7 657 76.6
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 4.7e-304 1047.3 655 77.3
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 1.4e-303 1045.8 653 77.8
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 1.8e-303 1045.4 655 76.3
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 3.1e-303 1044.6 652 77.0
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 1.5e-302 1042.3 653 77.8
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 2.0e-302 1042.0 654 76.0
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 4.4e-302 1040.8 652 76.8
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 4.4e-302 1040.8 655 76.6
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 2.2e-301 1038.5 655 76.3
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 8.3e-301 1036.6 652 76.5
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 1.1e-300 1036.2 655 75.9
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 1.9e-300 1035.4 652 76.2
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 2.4e-300 1035.0 652 76.4
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 4.1e-300 1034.2 654 76.5
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 5.4e-300 1033.9 657 76.0
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 7.0e-300 1033.5 708 73.2
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 1.2e-299 1032.7 653 76.1
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 3.5e-299 1031.2 653 75.7
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 3.5e-299 1031.2 655 75.1
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.3e-298 1029.2 652 75.8
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 3.0e-298 1028.1 652 75.6
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 3.0e-298 1028.1 652 75.6
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 5.0e-298 1027.3 652 76.2
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.9e-297 1025.4 652 75.3
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 1.9e-297 1025.4 675 73.5
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.5e-297 1025.0 653 75.7
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 2.5e-297 1025.0 654 76.1
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 4.3e-297 1024.2 652 75.3
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 5.6e-297 1023.8 647 75.7
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 2.3e-295 1018.5 679 73.2
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 2.3e-295 1018.5 652 75.5
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 5.2e-295 1017.3 652 75.3
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 2.0e-294 1015.4 652 74.7
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 4.4e-294 1014.2 653 74.9
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 9.8e-294 1013.1 703 71.1
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 1.3e-293 1012.7 652 74.8
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 3.7e-293 1011.1 654 74.6
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 1.6e-291 1005.7 632 77.5
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 3.5e-291 1004.6 681 73.1
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 1.3e-290 1002.7 663 73.0
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 3.0e-290 1001.5 608 79.1
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 9.5e-289 996.5 684 71.3
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 6.2e-288 993.8 666 73.3
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 1.1e-287 993.0 651 74.3
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 3.7e-285 984.6 656 73.8
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 2.1e-283 978.8 667 70.8
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 6.0e-283 977.2 658 72.2
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 7.8e-283 976.9 659 73.0
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 3.6e-280 968.0 684 70.3
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 3.1e-279 964.9 685 69.3
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 2.2e-277 958.7 655 71.9
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 4.2e-276 954.5 600 77.8
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 3.5e-275 951.4 679 69.8
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 1.1e-273 946.4 660 69.2
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 1.9e-273 945.7 661 69.9
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 9.0e-271 936.8 668 67.2
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 9.0e-271 936.8 699 68.1
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 2.0e-270 935.6 633 73.3
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 2.4e-268 928.7 594 76.6
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 2.4e-268 928.7 658 68.5
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 1.0e-266 923.3 801 61.0
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 6.7e-266 920.6 667 66.7
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 1.9e-265 919.1 658 69.0
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 9.6e-265 916.8 668 66.9
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 4.8e-264 914.4 567 77.2
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 2.4e-263 912.1 668 68.6
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 6.9e-263 910.6 666 66.2
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 2.6e-262 908.7 567 77.1
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 5.5e-260 901.0 555 78.2
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 2.5e-257 892.1 668 65.0
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 2.9e-253 878.6 614 72.5
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 2.3e-250 869.0 664 64.8
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 8.2e-248 860.5 867 54.6
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 1.0e-245 853.6 535 75.7
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.6e-235 819.7 652 61.8
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 1.4e-234 816.6 504 77.6
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 3.1e-231 805.4 484 79.5
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 1.8e-226 789.6 635 61.1
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.6e-222 776.5 668 59.3
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 1.6e-222 776.5 497 76.5
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 4.7e-195 685.3 667 54.7
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 4.1e-183 645.6 708 48.7
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.3e-181 640.6 502 65.7
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.6e-179 632.5 660 51.7
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 4.0e-178 629.0 664 50.8
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 4.9e-176 622.1 651 51.9
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 7.1e-175 618.2 636 51.1
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 1.8e-170 603.6 389 75.3
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 3.4e-169 599.4 337 84.9
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.1e-167 594.3 513 59.5
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 6.4e-160 568.5 365 75.1
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 1.1e-154 551.2 672 46.3
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 4.9e-152 542.3 337 78.3
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 5.8e-145 518.8 320 77.8
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 3.0e-141 506.5 658 47.0
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 2.0e-137 493.8 276 85.1
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 4.6e-126 456.1 649 42.7
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.2e-123 447.2 342 67.3
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 4.8e-115 419.5 652 39.4
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 4.7e-110 402.9 270 72.6
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 4.4e-108 396.4 309 68.6
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 8.2e-107 392.1 379 58.6
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 2.7e-94 350.5 237 71.3
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 2.3e-80 304.3 433 41.3
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 4.7e-78 296.6 475 40.4
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 1.1e-74 285.4 486 37.9
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 1.0e-72 278.9 655 30.4
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 5.6e-71 273.1 308 50.3
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 7.3e-71 272.7 231 56.3
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 1.9e-66 258.1 232 56.5
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.1e-64 250.0 201 61.7
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 3.6e-62 243.8 563 35.3
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 8.3e-59 232.6 277 46.6
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 1.3e-43 182.2 139 73.4
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.5e-39 167.9 145 64.8
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 2.2e-35 154.8 228 43.9
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 7.9e-33 146.4 112 64.3
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 5.6e-31 140.2 108 64.8
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 5.8e-28 130.2 126 54.0
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 3.5e-25 120.9 59 81.4
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 1.0e-24 119.4 80 71.2
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 5.1e-24 117.1 63 85.7
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 4.3e-23 114.0 61 77.0
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 5.8e-20 103.6 114 47.4
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 8.4e-19 99.8 69 65.2
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 1.9e-18 98.6 92 57.6
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 2.5e-18 98.2 145 40.0
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 3.0e-16 91.3 65 70.8
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 5.7e-15 87.0 79 57.0
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 9.7e-15 86.3 50 84.0
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 1.8e-13 82.0 50 76.0
CSS0001762 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D023785 2.6e-12 78.2 67 59.7
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 1.7e-11 75.5 39 87.2
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 5.0e-11 73.9 44 72.7
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 6.5e-11 73.6 45 84.4
BolC1t00770H Brassica oleracea HOM05D003985 ORTHO05D023785 1.4e-10 72.4 74 54.1
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 5.5e-10 70.5 48 60.4
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 6.1e-09 67.0 42 73.8
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 5.1e-08 63.9 42 66.7
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 6.7e-08 63.5 42 69.0
QL03p050850 Quercus lobata HOM05D000143 ORTHO05D000072 4.3e-07 60.8 48 66.7


User provided reference genes

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