Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 3.1e-94 348.6 194 100.0
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 1.2e-61 240.4 199 73.4
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 1.0e-60 237.3 205 65.9
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 1.0e-60 237.3 205 65.9
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 1.0e-60 237.3 205 65.9
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 2.2e-60 236.1 201 68.2
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 3.8e-60 235.3 194 70.1
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 7.2e-59 231.1 201 65.7
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 7.2e-59 231.1 201 69.7
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 1.6e-58 229.9 205 64.4
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 2.1e-58 229.6 199 64.3
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 4.7e-58 228.4 199 65.3
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 1.4e-57 226.9 206 64.6
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 3.0e-57 225.7 198 62.6
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.0e-57 225.7 198 62.6
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 3.0e-57 225.7 205 62.4
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 4.0e-57 225.3 201 66.2
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 5.2e-57 224.9 198 63.1
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 5.2e-57 224.9 202 65.3
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 1.2e-56 223.8 202 63.9
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 1.5e-56 223.4 199 63.3
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.5e-56 223.4 205 62.9
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 2.0e-56 223.0 199 65.3
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.0e-56 223.0 198 63.1
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 2.0e-56 223.0 195 63.6
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 2.6e-56 222.6 201 61.7
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 3.4e-56 222.2 202 62.4
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 4.4e-56 221.9 203 61.6
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 4.4e-56 221.9 206 62.1
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 9.8e-56 220.7 205 63.9
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 9.8e-56 220.7 198 62.1
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 9.8e-56 220.7 198 62.1
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.3e-55 220.3 205 62.9
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.7e-55 219.9 203 62.6
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 2.2e-55 219.5 206 62.6
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 2.2e-55 219.5 203 62.6
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 2.8e-55 219.2 206 63.6
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 3.7e-55 218.8 196 65.8
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 4.9e-55 218.4 206 63.6
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 8.3e-55 217.6 205 61.0
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 1.1e-54 217.2 197 62.4
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 1.4e-54 216.9 195 66.7
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 2.4e-54 216.1 204 64.2
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 2.4e-54 216.1 202 62.4
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 3.1e-54 215.7 204 64.2
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 3.1e-54 215.7 206 63.1
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 5.4e-54 214.9 205 61.0
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 7.0e-54 214.5 205 60.5
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 1.6e-53 213.4 206 62.6
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 1.6e-53 213.4 195 62.1
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 4.5e-53 211.8 204 61.8
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 7.7e-53 211.1 196 63.3
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 1.3e-52 210.3 197 61.9
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 2.3e-52 209.5 201 60.7
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 2.3e-52 209.5 195 61.5
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 2.3e-52 209.5 202 63.4
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 2.9e-52 209.1 202 60.4
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 2.9e-52 209.1 205 63.4
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 3.8e-52 208.8 202 59.9
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 8.6e-52 207.6 201 62.2
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 8.6e-52 207.6 202 63.4
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 1.5e-51 206.8 198 62.1
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 1.5e-51 206.8 203 62.6
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 2.5e-51 206.1 205 60.5
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 2.5e-51 206.1 210 60.5
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 3.3e-51 205.7 204 59.3
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 5.6e-51 204.9 204 58.8
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 9.5e-51 204.1 210 60.5
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 9.5e-51 204.1 209 59.8
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 2.8e-50 202.6 212 59.0
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 6.1e-50 201.4 205 57.6
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 8.0e-50 201.1 200 61.0
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 1.0e-49 200.7 197 59.9
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.4e-49 200.3 207 60.4
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 1.4e-49 200.3 196 59.7
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 1.8e-49 199.9 206 58.3
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 5.2e-49 198.4 201 58.7
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 8.9e-49 197.6 210 58.1
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 8.9e-49 197.6 206 58.3
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 1.2e-48 197.2 205 58.0
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 4.4e-48 195.3 194 57.7
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 5.7e-48 194.9 196 58.7
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 1.7e-47 193.4 196 58.7
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 1.7e-47 193.4 197 58.9
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 2.2e-47 193.0 191 57.6
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 2.2e-47 193.0 202 56.9
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 2.2e-47 193.0 207 58.9
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 2.9e-47 192.6 203 60.6
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.4e-46 190.3 197 56.3
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 4.1e-46 188.7 199 59.3
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 9.2e-46 187.6 193 57.5
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.6e-45 186.8 199 56.8
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 2.0e-45 186.4 207 56.5
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 2.7e-45 186.0 204 56.9
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 3.5e-45 185.7 212 58.5
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 1.0e-44 184.1 213 54.5
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 1.0e-44 184.1 196 56.1
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 1.0e-44 184.1 203 55.7
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 1.7e-44 183.3 209 54.5
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 2.3e-44 183.0 204 54.9
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 3.0e-44 182.6 205 55.6
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 3.0e-44 182.6 205 55.6
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 3.9e-44 182.2 202 55.0
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 3.9e-44 182.2 205 53.2
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 5.0e-44 181.8 200 54.5
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 3.3e-43 179.1 198 58.1
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 4.3e-43 178.7 207 54.6
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 4.3e-43 178.7 195 54.9
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 7.3e-43 177.9 210 54.3
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 1.2e-42 177.2 207 54.1
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 1.6e-42 176.8 207 54.1
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 1.6e-42 176.8 207 54.1
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 1.6e-42 176.8 207 54.1
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 1.6e-42 176.8 207 54.1
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 1.6e-42 176.8 207 54.1
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 1.6e-42 176.8 199 54.8
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 2.1e-42 176.4 171 60.2
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 2.8e-42 176.0 206 54.9
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 1.8e-41 173.3 181 55.8
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 1.8e-41 173.3 204 52.5
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 5.2e-41 171.8 197 56.9
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 2.0e-40 169.9 194 52.1
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 5.8e-40 168.3 205 51.7
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 1.3e-39 167.2 198 52.0
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 3.7e-39 165.6 201 50.7
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 6.4e-39 164.9 197 53.8
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 8.3e-39 164.5 205 51.2
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 1.1e-38 164.1 202 51.0
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 1.9e-38 163.3 205 50.2
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.3e-36 157.1 177 53.7
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 1.5e-35 153.7 201 51.2
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 1.2e-34 150.6 175 47.4
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 2.8e-34 149.4 163 52.8
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 3.4e-32 142.5 202 46.5
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 7.5e-32 141.4 115 65.2
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 1.3e-31 140.6 197 46.7
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.7e-31 140.2 141 55.3
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 1.1e-30 137.5 197 46.7
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.4e-30 137.1 138 52.2
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.6e-29 133.7 175 44.6
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 2.1e-29 133.3 197 44.7
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 2.7e-29 132.9 140 53.6
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 1.7e-28 130.2 176 50.6
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 3.9e-28 129.0 205 40.0
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 4.7e-26 122.1 164 48.8
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.2e-21 107.5 119 54.6
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 1.7e-20 103.6 125 48.8
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 4.3e-19 99.0 133 48.1
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 5.6e-19 98.6 139 45.3
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 1.2e-18 97.4 179 41.3
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 2.8e-18 96.3 80 65.0
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 1.2e-16 90.9 140 45.7
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 7.6e-16 88.2 133 42.9
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 2.2e-15 86.7 76 59.2
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 6.4e-15 85.1 109 45.0
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 2.4e-14 83.2 155 40.6
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 3.2e-14 82.8 186 37.6
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 1.0e-12 77.8 123 39.8
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 2.0e-08 63.5 117 35.0
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 5.8e-08 62.0 80 52.5


User provided reference genes

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