Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10526 Avicennia marina HOM05D005173 ORTHO05D006214 3.2e-181 638.3 315 100.0
Migut.L01541 Erythranthe guttata HOM05D005173 ORTHO05D006214 1.6e-153 546.2 315 82.9
MSTRG.19482 Avicennia marina HOM05D005173 ORTHO05D006214 2.9e-150 535.4 308 83.8
Manes.03G037700 Manihot esculenta HOM05D005173 ORTHO05D006214 4.2e-149 531.6 306 81.7
Dinv25585 Davidia involucrata HOM05D005173 ORTHO05D006214 9.4e-149 530.4 307 83.1
Dinv42364 Davidia involucrata HOM05D005173 ORTHO05D006214 9.4e-149 530.4 307 83.7
PGR142G0948 Punica granatum HOM05D005173 ORTHO05D006214 6.1e-148 527.7 307 82.1
Thecc.09G081500 Theobroma cacao HOM05D005173 ORTHO05D006214 1.0e-147 526.9 316 81.0
Prupe.7G203600 Prunus persica HOM05D005173 ORTHO05D006214 2.3e-147 525.8 312 80.4
Sc18g0002360 Simmondsia chinensis HOM05D005173 ORTHO05D006214 8.8e-147 523.9 307 80.8
MSTRG.26457 Avicennia marina HOM05D005173 ORTHO05D006214 1.1e-146 523.5 303 83.5
Sopen07g020470 Solanum pennellii HOM05D005173 ORTHO05D006214 1.1e-146 523.5 306 82.0
CSS0048515 Camellia sinensis var. sinensis HOM05D005173 ORTHO05D006214 1.5e-146 523.1 310 81.0
Atru.chr7.1658 Acer truncatum HOM05D005173 ORTHO05D006214 2.0e-146 522.7 319 79.0
CANSAT56G2861 Cannabis sativa HOM05D005173 ORTHO05D006214 2.0e-146 522.7 309 80.3
Nn8g38732 Nelumbo nucifera HOM05D005173 ORTHO05D006214 2.0e-146 522.7 306 82.0
Solyc07g041200.3 Solanum lycopersicum HOM05D005173 ORTHO05D006214 2.6e-146 522.3 306 81.7
PGSC0003DMG400020952 Solanum tuberosum HOM05D005173 ORTHO05D006214 2.6e-146 522.3 306 81.7
ClCG03G015280 Citrullus lanatus HOM05D005173 ORTHO05D006214 4.4e-146 521.5 310 79.7
Manes.16G098000 Manihot esculenta HOM05D005173 ORTHO05D006214 4.4e-146 521.5 312 78.8
MD15G1213300 Malus domestica HOM05D005173 ORTHO05D006214 5.7e-146 521.2 310 80.3
CiPaw.03G210500 Carya illinoinensis HOM05D005173 ORTHO05D006214 7.4e-146 520.8 307 81.4
Ciclev10008959m.g Citrus clementina HOM05D005173 ORTHO05D006214 9.7e-146 520.4 310 80.3
MD02G1086100 Malus domestica HOM05D005173 ORTHO05D006214 9.7e-146 520.4 310 80.3
MELO3C015504.2 Cucumis melo HOM05D005173 ORTHO05D006214 1.3e-145 520.0 310 79.4
CsaV3_1G040770 Cucumis sativus L. HOM05D005173 ORTHO05D006214 2.2e-145 519.2 310 79.7
Eucgr.C00843 Eucalyptus grandis HOM05D005173 ORTHO05D006214 2.2e-145 519.2 307 80.8
Cc00_g19370 Coffea canephora HOM05D005173 ORTHO05D006214 3.7e-145 518.5 307 80.8
CAN.G88.5 Capsicum annuum HOM05D005173 ORTHO05D006214 4.8e-145 518.1 306 81.7
Hma1.2p1_0797F.1_g219350 Hydrangea macrophylla HOM05D005173 ORTHO05D006214 4.8e-145 518.1 307 81.1
TAR636G1303 Trochodendron aralioides HOM05D005173 ORTHO05D006214 8.2e-145 517.3 313 79.6
Lj4g0027115 Lotus japonicus HOM05D005173 ORTHO05D006214 1.1e-144 516.9 307 79.8
VMungo1215G2902 Vigna mungo HOM05D005173 ORTHO05D006214 1.1e-144 516.9 309 79.6
QL02p061251 Quercus lobata HOM05D005173 ORTHO05D006214 1.4e-144 516.5 306 80.7
GSVIVG01015121001 Vitis vinifera HOM05D005173 ORTHO05D006214 1.4e-144 516.5 313 80.5
Actinidia39689 Actinidia chinensis HOM05D005173 ORTHO05D006214 1.8e-144 516.2 310 80.3
TWI32G0591 Tripterygium wilfordii HOM05D005173 ORTHO05D006214 2.4e-144 515.8 309 78.3
Glyma.13G107800 Glycine max HOM05D005173 ORTHO05D006214 4.1e-144 515.0 307 80.1
Potri.018G064800 Populus trichocarpa HOM05D005173 ORTHO05D006214 4.1e-144 515.0 310 79.7
Potri.006G145200 Populus trichocarpa HOM05D005173 ORTHO05D006214 5.3e-144 514.6 310 79.4
Duzib150G1290 Durio zibethinus HOM05D005173 ORTHO05D006214 6.9e-144 514.2 307 80.5
RcHm_v2.0_Chr2g0094221 Rosa chinensis HOM05D005173 ORTHO05D006214 1.5e-143 513.1 310 79.4
Glyma.17G051500 Glycine max HOM05D005173 ORTHO05D006214 2.0e-143 512.7 307 79.8
Phvul.003G133200 Phaseolus vulgaris HOM05D005173 ORTHO05D006214 2.0e-143 512.7 315 78.1
FvH4_1g08150 Fragaria vesca HOM05D005173 ORTHO05D006214 3.4e-143 511.9 307 79.5
TWI63G0548 Tripterygium wilfordii HOM05D005173 ORTHO05D006214 3.4e-143 511.9 307 78.5
FAN23G0270 Fragaria x ananassa HOM05D005173 ORTHO05D006214 7.7e-143 510.8 307 79.5
FAN28G2824 Fragaria x ananassa HOM05D005173 ORTHO05D006214 7.7e-143 510.8 307 79.5
Cpa.g.sc28.94 Carica papaya HOM05D005173 ORTHO05D006214 1.0e-142 510.4 310 77.7
FAN19G2713 Fragaria x ananassa HOM05D005173 ORTHO05D006214 1.0e-142 510.4 307 79.2
arahy.Tifrunner.gnm1.ann1.6AS4TW Arachis hypogaea HOM05D005173 ORTHO05D006214 1.7e-142 509.6 307 80.1
Gorai.013G226300 Gossypium raimondii HOM05D005173 ORTHO05D006214 1.7e-142 509.6 298 81.2
Lalb_Chr07g0181031 Lupinus albus HOM05D005173 ORTHO05D006214 1.7e-142 509.6 306 79.7
Sed0012764 Sechium edule HOM05D005173 ORTHO05D006214 2.9e-142 508.8 317 77.3
FAN26G2726 Fragaria x ananassa HOM05D005173 ORTHO05D006214 3.8e-142 508.4 312 78.2
FAN26G1854 Fragaria x ananassa HOM05D005173 ORTHO05D006214 5.0e-142 508.1 310 78.4
Gohir.A13G192200 Gossypium hirsutum HOM05D005173 ORTHO05D006214 5.0e-142 508.1 314 77.4
arahy.Tifrunner.gnm1.ann1.9Y0BJI Arachis hypogaea HOM05D005173 ORTHO05D006214 6.5e-142 507.7 307 79.8
HanXRQChr01g0007561 Helianthus annuus HOM05D005173 ORTHO05D006214 8.5e-142 507.3 305 77.7
HanXRQChr09g0237971 Helianthus annuus HOM05D005173 ORTHO05D006214 8.5e-142 507.3 307 77.9
EL10Ac8g19142 Beta vulgaris HOM05D005173 ORTHO05D006214 1.1e-141 506.9 311 77.5
TAR624G0255 Trochodendron aralioides HOM05D005173 ORTHO05D006214 1.1e-141 506.9 317 77.6
Lalb_Chr12g0200011 Lupinus albus HOM05D005173 ORTHO05D006214 3.2e-141 505.4 308 77.9
Ca_21308_v3 Cicer arietinum L. HOM05D005173 ORTHO05D006214 4.2e-141 505.0 307 78.8
PSO063G3756 Papaver somniferum HOM05D005173 ORTHO05D006214 4.2e-141 505.0 317 75.7
Oeu054818.3 Olea europaea HOM05D005173 ORTHO05D006214 1.2e-140 503.4 357 70.9
PSO421G0551 Papaver somniferum HOM05D005173 ORTHO05D006214 1.2e-140 503.4 317 75.4
Sed0013811 Sechium edule HOM05D005173 ORTHO05D006214 1.2e-140 503.4 317 76.7
Aqoxy7G01101 Aquilegia oxysepala HOM05D005173 ORTHO05D006214 3.6e-140 501.9 303 78.9
Medtr4g125660 Medicago truncatula HOM05D005173 ORTHO05D006214 1.4e-139 500.0 296 80.7
BcaB08g36505 Brassica carinata HOM05D005173 ORTHO05D006214 3.9e-139 498.4 294 79.6
Psat4g016960 Pisum sativum HOM05D005173 ORTHO05D006214 3.9e-139 498.4 307 77.9
THA.LOC104799624 Tarenaya hassleriana HOM05D005173 ORTHO05D006214 8.8e-139 497.3 306 77.8
SGA_v2.0_scaffold21G09462 Striga asiatica HOM05D005173 ORTHO05D006214 1.1e-138 496.9 364 69.8
COL.COLO4_18139 Corchorus olitorius HOM05D005173 ORTHO05D006214 3.3e-138 495.4 336 73.2
Gohir.D13G197600 Gossypium hirsutum HOM05D005173 ORTHO05D006214 4.4e-138 495.0 298 79.9
ECA234G3859 Erigeron canadensis HOM05D005173 ORTHO05D006214 9.7e-138 493.8 317 73.5
Lsat_1_v5_gn_5_142000 Lactuca sativa HOM05D005173 ORTHO05D006214 6.3e-137 491.1 303 75.2
A10p19490 Brassica napus HOM05D005173 ORTHO05D006214 1.4e-136 490.0 309 74.1
Haze_25966 Corylus avellana HOM05D005173 ORTHO05D006214 2.4e-136 489.2 378 66.7
Nitab4.5_0013150g0020 Nicotiana tabacum HOM05D005173 ORTHO05D006214 3.1e-136 488.8 306 78.8
BraA10t44025Z Brassica rapa HOM05D005173 ORTHO05D006214 4.1e-136 488.4 296 77.4
Nitab4.5_0001488g0160 Nicotiana tabacum HOM05D005173 ORTHO05D006214 7.0e-136 487.6 306 78.4
Sp6g23940 Schrenkiella parvula HOM05D005173 ORTHO05D006214 7.0e-136 487.6 305 74.4
CDE04G2820 Ceratophyllum demersum HOM05D005173 ORTHO05D006214 1.6e-135 486.5 304 74.7
BcaC04g19437 Brassica carinata HOM05D005173 ORTHO05D006214 2.0e-135 486.1 296 77.0
C09p55690 Brassica napus HOM05D005173 ORTHO05D006214 2.0e-135 486.1 296 77.0
Thhalv10014184m.g Eutrema salsugineum HOM05D005173 ORTHO05D006214 2.0e-135 486.1 306 74.2
AL6G32050 Arabidopsis lyrata HOM05D005173 ORTHO05D006214 3.5e-135 485.3 306 74.5
CARHR192290 Cardamine hirsuta HOM05D005173 ORTHO05D006214 5.9e-135 484.6 306 75.2
Lsat_1_v5_gn_7_34821 Lactuca sativa HOM05D005173 ORTHO05D006214 5.9e-135 484.6 302 76.5
AT5G20520 Arabidopsis thaliana HOM05D005173 ORTHO05D006214 1.0e-134 483.8 306 74.5
SalBow1G6961 Salvia bowleyana HOM05D005173 ORTHO05D006214 1.7e-134 483.0 344 71.5
BolC9t58435H Brassica oleracea HOM05D005173 ORTHO05D006214 2.2e-134 482.6 296 76.7
A02p06290 Brassica napus HOM05D005173 ORTHO05D006214 3.8e-134 481.9 301 74.8
BraA02t05577Z Brassica rapa HOM05D005173 ORTHO05D006214 3.8e-134 481.9 301 74.8
DCAR_024724 Daucus carota HOM05D005173 ORTHO05D006214 8.5e-134 480.7 303 74.3
Carub.0006s1885 Capsella rubella HOM05D005173 ORTHO05D006214 1.1e-133 480.3 301 75.4
Sabra18G0057400 Salix brachista HOM05D005173 ORTHO05D006214 1.1e-133 480.3 374 65.5
BolC2t07046H Brassica oleracea HOM05D005173 ORTHO05D006214 1.5e-133 479.9 301 74.8
AUR62029004 Chenopodium quinoa HOM05D005173 ORTHO05D006214 5.5e-133 478.0 307 74.6
Lj7C682G9 Lonicera japonica HOM05D005173 ORTHO05D006214 7.2e-133 477.6 303 76.9
Duzib168G0179 Durio zibethinus HOM05D005173 ORTHO05D006214 3.6e-132 475.3 307 74.3
BcaB05g22843 Brassica carinata HOM05D005173 ORTHO05D006214 6.1e-132 474.6 301 74.8
AUR62025172 Chenopodium quinoa HOM05D005173 ORTHO05D006214 3.0e-131 472.2 307 73.9
Ah.14g085040 Amaranthus hybridus HOM05D005173 ORTHO05D006214 4.0e-131 471.9 314 72.6
Peaxi162Scf00246g00045 Petunia axillaris HOM05D005173 ORTHO05D006214 7.5e-130 467.6 290 79.0
Sabra06G0114800 Salix brachista HOM05D005173 ORTHO05D006214 2.2e-129 466.1 315 72.4
unitig_22.g5750 Utricularia gibba HOM05D005173 ORTHO05D006214 2.2e-129 466.1 309 72.2
Zm00001eb108940 Zea mays HOM05D005173 ORTHO05D006214 3.7e-129 465.3 307 70.0
Os07g0608300 Oryza sativa ssp. japonica HOM05D005173 ORTHO05D006214 2.4e-128 462.6 307 69.4
vmacro17173 Vaccinium macrocarpon HOM05D005173 ORTHO05D006214 1.6e-127 459.9 419 58.9
SHI33752 Sapria himalayana HOM05D005173 ORTHO05D006214 1.0e-123 447.2 289 73.4
HPP92_006149 Vanilla planifolia HOM05D005173 ORTHO05D006214 4.0e-123 445.3 310 68.1
Aa31LG1G14140 Aethionema arabicum HOM05D005173 ORTHO05D006214 5.2e-123 444.9 312 68.9
DCAR_028284 Daucus carota HOM05D005173 ORTHO05D006214 5.2e-123 444.9 319 66.5
Rhsim05G0012900 Rhododendron simsii HOM05D005173 ORTHO05D006214 2.8e-116 422.5 335 64.8
Mapoly0002s0260 Marchantia polymorpha HOM05D005173 ORTHO05D006214 3.4e-114 415.6 296 66.6
SMO203G0271 Selaginella moellendorffii HOM05D005173 ORTHO05D006214 3.1e-112 409.1 298 65.4
DCAR_031940 Daucus carota HOM05D005173 ORTHO05D006214 1.3e-105 387.1 303 62.0
ATR0598G148 Amborella trichopoda HOM05D005173 ORTHO05D006214 1.2e-103 380.6 233 78.5
BcaC03g13770 Brassica carinata HOM05D005173 ORTHO05D006214 8.6e-102 374.4 281 66.9
Pp3c15_14310 Physcomitrium patens HOM05D005173 ORTHO05D006214 3.3e-101 372.5 309 59.5
BcaB05g22835 Brassica carinata HOM05D005173 ORTHO05D006214 5.4e-96 355.1 223 74.9
Actinidia25222 Actinidia chinensis HOM05D005173 ORTHO05D006214 7.3e-93 344.7 217 77.0
CBR_g3819 Chara braunii HOM05D005173 ORTHO05D006214 1.5e-90 337.0 306 56.5
QL02p061362 Quercus lobata HOM05D005173 ORTHO05D006214 4.6e-87 325.5 194 79.4
TPR.G9429 Trifolium pratense HOM05D005173 ORTHO05D006214 1.5e-77 293.9 176 79.5
Rhsim03G0230600 Rhododendron simsii HOM05D005173 ORTHO05D006214 1.6e-71 273.9 215 63.7
HPP92_009230 Vanilla planifolia HOM05D005173 ORTHO05D006214 3.5e-71 272.7 175 75.4
Cre03.g160100 Chlamydomonas reinhardtii HOM05D005173 ORTHO05D006214 3.2e-56 223.0 302 41.1
HPP92_009231 Vanilla planifolia HOM05D005173 ORTHO05D006214 4.8e-52 209.1 134 70.9
TPR.G23232 Trifolium pratense HOM05D005173 ORTHO05D006214 4.0e-51 206.1 132 71.2
BNapus_Darmor_BZH_scaffold_38p01550 Brassica napus HOM05D005173 ORTHO05D006214 1.3e-44 184.5 128 71.1
Cfa026742 Carpinus fangiana HOM05D005173 ORTHO05D006214 1.2e-34 151.4 312 34.3
SGA_v2.0_scaffold23G10070 Striga asiatica HOM05D005173 ORTHO05D006214 2.4e-27 127.1 118 56.8
PRCOL_00002900 Prasinoderma coloniale HOM05D005173 ORTHO05D006214 3.8e-25 119.8 304 29.6
ClCG07G005020 Citrullus lanatus HOM05D005173 ORTHO05D006214 2.0e-21 107.5 77 68.8
Cfa023090 Carpinus fangiana HOM05D005173 ORTHO05D126580 1.8e-19 100.9 290 27.6
Hma1.2p1_0440F.1_g153610 Hydrangea macrophylla HOM05D005173 ORTHO05D006214 3.5e-18 96.7 78 61.5
CSS0040146 Camellia sinensis var. sinensis HOM05D005173 ORTHO05D006214 2.2e-17 94.0 54 75.9
Lsat_1_v5_gn_2_31840 Lactuca sativa HOM05D005173 ORTHO05D006214 4.0e-14 83.2 57 68.4
Lsat_1_v5_gn_5_98841 Lactuca sativa HOM05D005173 ORTHO05D006214 6.7e-14 82.4 74 54.1
Haze_27227 Corylus avellana HOM05D000464 ORTHO05D000408 1.7e-12 77.8 204 28.4
MCO15G111 Micromonas commoda HOM05D005173 ORTHO05D006214 2.2e-12 77.4 274 25.5
Psat1g081920 Pisum sativum HOM05D000464 ORTHO05D000408 3.1e-11 73.6 222 27.5
THA.LOC104823854 Tarenaya hassleriana HOM05D000464 ORTHO05D000408 7.0e-11 72.4 199 27.1
Ca_04375_v3 Cicer arietinum L. HOM05D000464 ORTHO05D000408 1.6e-10 71.2 227 26.0
Glyma.19G050600 Glycine max HOM05D000464 ORTHO05D000408 7.7e-10 68.9 200 27.0
Medtr6g018930 Medicago truncatula HOM05D000464 ORTHO05D000408 1.3e-09 68.2 195 27.7
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 1.7e-09 67.8 47 70.2
MCO11G125 Micromonas commoda HOM05D000464 ORTHO05D000408 2.9e-09 67.0 199 25.1
Lalb_Chr02g0158151 Lupinus albus HOM05D000464 ORTHO05D000408 5.0e-09 66.2 181 27.6
Lj2g0002905 Lotus japonicus HOM05D000464 ORTHO05D000408 6.5e-09 65.9 194 26.8
Sc11g0008440 Simmondsia chinensis HOM05D000464 ORTHO05D000408 8.5e-09 65.5 176 26.1
Glyma.13G044600 Glycine max HOM05D000464 ORTHO05D000408 1.1e-08 65.1 255 24.7
SalBow5G5150 Salvia bowleyana HOM05D000464 ORTHO05D000408 1.5e-08 64.7 176 27.3
BolC6t37012H Brassica oleracea HOM05D000464 ORTHO05D000408 1.9e-08 64.3 239 25.1
Lalb_Chr17g0341571 Lupinus albus HOM05D000464 ORTHO05D000408 1.9e-08 64.3 201 26.4
Manes.01G112100 Manihot esculenta HOM05D000464 ORTHO05D000408 1.9e-08 64.3 176 26.1
Phvul.004G067200 Phaseolus vulgaris HOM05D000464 ORTHO05D000408 2.5e-08 63.9 176 26.1
Ciclev10012120m.g Citrus clementina HOM05D000464 ORTHO05D000408 4.2e-08 63.2 176 26.7
HanXRQChr15g0472811 Helianthus annuus HOM05D000464 ORTHO05D000408 4.2e-08 63.2 247 24.3
Lalb_Chr10g0092631 Lupinus albus HOM05D000464 ORTHO05D000408 9.4e-08 62.0 199 25.6
Dinv33961 Davidia involucrata HOM05D000464 ORTHO05D000408 2.1e-07 60.8 178 27.0
Lalb_Chr17g0336771 Lupinus albus HOM05D000464 ORTHO05D000408 2.7e-07 60.5 246 24.4
Mapoly0127s0041 Marchantia polymorpha HOM05D000464 ORTHO05D000408 3.6e-07 60.1 171 28.1
Oeu050382.1 Olea europaea HOM05D000464 ORTHO05D000408 3.6e-07 60.1 176 26.7
Sabra04G0066100 Salix brachista HOM05D000464 ORTHO05D000408 3.6e-07 60.1 176 25.6
Cc07_g04600 Coffea canephora HOM05D000464 ORTHO05D000408 4.7e-07 59.7 199 23.6
PGR004G0263 Punica granatum HOM05D000464 ORTHO05D000408 6.1e-07 59.3 190 24.2
Pp3c11_18640 Physcomitrium patens HOM05D000464 ORTHO05D000408 8.0e-07 58.9 167 27.5
AT1G13610 Arabidopsis thaliana HOM05D000464 ORTHO05D000408 1.0e-06 58.5 239 25.9
EL10Ac2g04416 Beta vulgaris HOM05D000464 ORTHO05D000408 1.4e-06 58.2 234 23.9
Eucgr.I02080 Eucalyptus grandis HOM05D000464 ORTHO05D000408 1.8e-06 57.8 236 22.5
Zm00001eb199240 Zea mays HOM05D000464 ORTHO05D000408 1.8e-06 57.8 190 26.8
SEGI_17932 Sequoiadendron giganteum HOM05D005173 ORTHO05D006214 2.3e-06 57.4 38 71.1
MCO09G851 Micromonas commoda HOM05D002163 ORTHO05D002386 3.0e-06 57.0 221 25.3
FAN10G1265 Fragaria x ananassa HOM05D000464 ORTHO05D000408 5.2e-06 56.2 180 25.6
CANSAT64G2774 Cannabis sativa HOM05D000464 ORTHO05D000408 8.8e-06 55.5 190 24.2


User provided reference genes

Program Settings