Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 5.6e-178 627.5 312 100.0
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 6.5e-86 321.6 289 60.6
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 2.8e-76 289.7 313 52.4
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 3.3e-61 239.6 255 55.3
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 1.7e-57 227.3 316 43.0
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 3.2e-56 223.0 315 44.1
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 5.4e-56 222.2 254 48.4
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 3.9e-54 216.1 315 42.2
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 3.9e-54 216.1 315 42.2
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 2.5e-53 213.4 311 43.4
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 1.1e-45 188.0 322 39.8
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 2.1e-44 183.7 307 37.1
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 2.0e-42 177.2 281 40.9
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 9.9e-42 174.9 278 38.1
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 2.2e-41 173.7 280 40.0
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 3.8e-41 172.9 278 38.5
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 4.9e-41 172.6 153 57.5
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 5.4e-40 169.1 277 38.6
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 5.4e-40 169.1 277 38.6
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 7.1e-40 168.7 333 33.6
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 9.3e-40 168.3 258 41.5
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 2.7e-39 166.8 324 36.4
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 4.6e-39 166.0 295 38.0
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 7.8e-39 165.2 290 39.3
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 1.3e-38 164.5 280 37.5
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 4.8e-36 156.0 283 38.2
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 2.4e-35 153.7 275 38.5
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 9.0e-35 151.8 304 33.9
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 1.2e-34 151.4 300 33.3
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 1.5e-34 151.0 254 38.6
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 1.5e-34 151.0 282 39.7
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 7.6e-34 148.7 283 37.5
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 1.3e-33 147.9 273 36.6
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 3.8e-33 146.4 262 37.8
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 4.9e-33 146.0 283 36.7
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 1.4e-32 144.4 257 35.4
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 2.4e-32 143.7 298 34.6
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 2.4e-32 143.7 337 34.4
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 3.2e-32 143.3 274 36.1
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 5.4e-32 142.5 305 33.4
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 5.4e-32 142.5 263 38.0
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 7.1e-32 142.1 343 31.2
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 9.3e-32 141.7 309 35.6
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 1.2e-31 141.4 308 33.1
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 1.2e-31 141.4 289 37.0
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 1.6e-31 141.0 303 32.3
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 2.1e-31 140.6 304 31.2
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 2.7e-31 140.2 295 33.6
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 2.7e-31 140.2 306 32.4
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 3.5e-31 139.8 296 35.5
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 3.5e-31 139.8 289 36.7
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 4.6e-31 139.4 292 35.6
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 6.0e-31 139.0 288 35.1
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 1.3e-30 137.9 336 33.0
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 1.8e-30 137.5 308 33.1
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 1.8e-30 137.5 378 30.4
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 3.0e-30 136.7 277 35.7
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 3.0e-30 136.7 280 37.1
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 5.1e-30 136.0 300 35.0
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 1.9e-29 134.0 291 36.4
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 1.9e-29 134.0 263 36.5
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 2.5e-29 133.7 283 31.1
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 7.4e-29 132.1 254 36.2
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 7.4e-29 132.1 289 35.6
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 9.6e-29 131.7 270 35.2
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 1.6e-28 131.0 311 32.5
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 2.8e-28 130.2 299 34.1
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 3.7e-28 129.8 310 31.6
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 4.8e-28 129.4 295 35.6
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 6.2e-28 129.0 339 31.0
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 1.1e-27 128.3 303 35.0
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 1.5e-26 124.4 263 36.1
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 2.0e-26 124.0 318 32.4
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 9.9e-26 121.7 278 33.8
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 9.9e-26 121.7 276 34.1
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.3e-25 121.3 284 34.5
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 2.2e-25 120.6 275 30.9
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 3.8e-25 119.8 299 33.1
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 3.8e-25 119.8 275 30.9
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 4.9e-25 119.4 299 32.4
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 4.2e-24 116.3 310 31.0
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 5.5e-24 115.9 305 31.8
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 7.1e-24 115.5 304 31.9
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 9.3e-24 115.2 168 41.7
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 1.2e-23 114.8 215 37.2
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 6.0e-23 112.5 321 28.7
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 9.6e-21 105.1 293 28.7
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 1.3e-20 104.8 262 32.4
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.3e-20 104.8 262 32.4
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 9.0e-19 98.6 334 24.6
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 1.5e-18 97.8 281 28.8
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 5.8e-18 95.9 148 37.2
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 2.9e-17 93.6 146 40.4
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 2.5e-16 90.5 277 28.5
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 3.2e-16 90.1 265 29.8
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 9.3e-16 88.6 286 28.7
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.6e-15 87.8 305 26.6
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 4.6e-15 86.3 111 36.9
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 1.8e-14 84.3 126 34.9
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 1.8e-14 84.3 286 28.0
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 1.8e-14 84.3 125 38.4
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 2.3e-14 84.0 169 35.5
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 6.7e-14 82.4 86 43.0
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 1.9e-13 80.9 101 36.6
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 1.9e-13 80.9 309 26.9
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 2.5e-13 80.5 280 27.9
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 1.6e-12 77.8 198 28.3
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 3.7e-12 76.6 94 39.4
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 3.7e-12 76.6 94 39.4
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 6.3e-12 75.9 117 35.0
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.4e-11 74.7 94 39.4
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 3.1e-11 73.6 101 35.6
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 4.1e-11 73.2 56 50.0
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 6.9e-11 72.4 148 35.1
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 6.9e-11 72.4 90 37.8
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 9.0e-11 72.0 99 36.4
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 1.0e-09 68.6 103 38.8
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 1.3e-09 68.2 103 36.9
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 2.2e-09 67.4 159 27.0
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 8.5e-09 65.5 101 33.7
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 2.5e-08 63.9 47 51.1
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-07 61.6 48 43.8
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 3.6e-07 60.1 284 27.1
vmacro05816 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 3.6e-07 60.1 72 34.7
Atru.chr4.823 Acer truncatum HOM05D002415 ORTHO05D002522 6.1e-07 59.3 50 44.0
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 6.1e-07 59.3 240 25.0
Sopen05g001650 Solanum pennellii HOM05D003353 ORTHO05D003751 7.9e-07 58.9 62 35.5
AUR62017918 Chenopodium quinoa HOM05D002415 ORTHO05D002522 1.0e-06 58.5 72 31.9
Sed0013494 Sechium edule HOM05D004258 ORTHO05D005163 1.0e-06 58.5 72 31.9
Manes.12G029600 Manihot esculenta HOM05D003353 ORTHO05D003751 1.3e-06 58.2 57 42.1
Mapoly0198s0007 Marchantia polymorpha HOM05D000465 ORTHO05D000301 1.3e-06 58.2 48 41.7
Os01g0883400 Oryza sativa ssp. japonica HOM05D004258 ORTHO05D005163 1.3e-06 58.2 72 33.3
MELO3C013235.2 Cucumis melo HOM05D004258 ORTHO05D005163 1.8e-06 57.8 72 30.6
CsaV3_7G022050 Cucumis sativus L. HOM05D004258 ORTHO05D005163 1.8e-06 57.8 72 30.6
MD15G1338000 Malus domestica HOM05D002415 ORTHO05D002522 1.8e-06 57.8 62 33.9
Sed0013187 Sechium edule HOM05D004258 ORTHO05D005163 1.8e-06 57.8 63 36.5
Atru.chr13.1596 Acer truncatum HOM05D004258 ORTHO05D005163 2.3e-06 57.4 68 32.4
ClCG11G008920 Citrullus lanatus HOM05D004258 ORTHO05D005163 2.3e-06 57.4 64 34.4
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 2.3e-06 57.4 53 49.1
AUR62003607 Chenopodium quinoa HOM05D002415 ORTHO05D002522 3.0e-06 57.0 62 33.9
Actinidia06029 Actinidia chinensis HOM05D003353 ORTHO05D003751 3.9e-06 56.6 52 38.5
Aqoxy3G01754 Aquilegia oxysepala HOM05D004258 ORTHO05D005163 3.9e-06 56.6 60 38.3
EL10Ac6g15270 Beta vulgaris HOM05D002415 ORTHO05D002522 3.9e-06 56.6 62 35.5
QL06p029526 Quercus lobata HOM05D002415 ORTHO05D002522 3.9e-06 56.6 59 35.6
Aqoxy6G00382 Aquilegia oxysepala HOM05D002415 ORTHO05D002522 5.1e-06 56.2 50 40.0
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 5.1e-06 56.2 60 33.3
DCAR_016655 Daucus carota HOM05D004258 ORTHO05D005163 5.1e-06 56.2 49 40.8
Lalb_Chr04g0253581 Lupinus albus HOM05D004258 ORTHO05D005163 5.1e-06 56.2 50 34.0
Potri.012G018300 Populus trichocarpa HOM05D002415 ORTHO05D002522 5.1e-06 56.2 64 35.9
Solyc11g005730.3 Solanum lycopersicum HOM05D002415 ORTHO05D002522 5.1e-06 56.2 89 30.3
Sopen11g001690 Solanum pennellii HOM05D002415 ORTHO05D002522 5.1e-06 56.2 89 30.3
Ah.02g121900 Amaranthus hybridus HOM05D002415 ORTHO05D002522 6.7e-06 55.8 62 35.5
arahy.Tifrunner.gnm1.ann1.655WP4 Arachis hypogaea HOM05D002415 ORTHO05D002522 6.7e-06 55.8 62 35.5
arahy.Tifrunner.gnm1.ann1.LSW17J Arachis hypogaea HOM05D002415 ORTHO05D002522 6.7e-06 55.8 62 35.5
MSTRG.7892 Avicennia marina HOM05D003353 ORTHO05D003751 6.7e-06 55.8 46 43.5
Cpa.g.sc64.156 Carica papaya HOM05D004258 ORTHO05D005163 6.7e-06 55.8 78 35.9
Cfa018415 Carpinus fangiana HOM05D004258 ORTHO05D005163 6.7e-06 55.8 67 37.3
RcHm_v2.0_Chr2g0120191 Rosa chinensis HOM05D002415 ORTHO05D002522 6.7e-06 55.8 57 36.8
Cre02.g142306 Chlamydomonas reinhardtii HOM05D017362 ORTHO05D018980 8.7e-06 55.5 49 36.7
Cre05.g241653 Chlamydomonas reinhardtii HOM05D017362 ORTHO05D018980 8.7e-06 55.5 49 36.7
Cre14.g612350 Chlamydomonas reinhardtii HOM05D017362 ORTHO05D018980 8.7e-06 55.5 49 36.7
Cre16.g679050 Chlamydomonas reinhardtii HOM05D017362 ORTHO05D018980 8.7e-06 55.5 49 36.7
Cre16.g679151 Chlamydomonas reinhardtii HOM05D017362 ORTHO05D018980 8.7e-06 55.5 49 36.7
Cre23.g754547 Chlamydomonas reinhardtii HOM05D017362 ORTHO05D018980 8.7e-06 55.5 49 36.7
Manes.13G082300 Manihot esculenta HOM05D002415 ORTHO05D002522 8.7e-06 55.5 74 33.8
PSO170G1843 Papaver somniferum HOM05D004258 ORTHO05D005163 8.7e-06 55.5 59 33.9
PSO528G0114 Papaver somniferum HOM05D004258 ORTHO05D005163 8.7e-06 55.5 59 33.9
Sabra05G0050000 Salix brachista HOM05D002415 ORTHO05D002522 8.7e-06 55.5 55 32.7
SGA_v2.0_scaffold165G38252 Striga asiatica HOM05D003353 ORTHO05D003751 8.7e-06 55.5 46 43.5


User provided reference genes

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