Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 3.4e-70 268.1 125 100.0
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 9.7e-65 250.0 125 92.0
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 8.5e-61 236.9 125 88.0
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 8.5e-61 236.9 125 88.0
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 2.5e-60 235.3 118 90.7
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 3.6e-59 231.5 116 87.9
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 6.7e-58 227.3 116 85.3
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 2.0e-57 225.7 116 86.2
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 2.6e-57 225.3 116 85.3
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 4.4e-57 224.6 116 82.8
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 4.4e-57 224.6 116 82.8
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 5.7e-57 224.2 116 84.5
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 5.7e-57 224.2 116 82.8
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 7.4e-57 223.8 117 81.2
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 1.3e-56 223.0 116 84.5
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 2.2e-56 222.2 112 87.5
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 2.2e-56 222.2 116 85.3
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 2.8e-56 221.9 116 84.5
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 2.8e-56 221.9 120 83.3
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 2.8e-56 221.9 125 78.4
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 3.7e-56 221.5 116 83.6
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 4.8e-56 221.1 114 85.1
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 6.3e-56 220.7 116 84.5
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 6.3e-56 220.7 116 84.5
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 6.3e-56 220.7 116 84.5
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 2.4e-55 218.8 118 82.2
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 3.1e-55 218.4 116 83.6
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 5.3e-55 217.6 112 85.7
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 5.3e-55 217.6 117 79.5
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 7.0e-55 217.2 115 83.5
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 7.0e-55 217.2 115 83.5
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 7.0e-55 217.2 115 83.5
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 7.0e-55 217.2 113 84.1
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 9.1e-55 216.9 115 82.6
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 1.2e-54 216.5 112 84.8
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 2.6e-54 215.3 117 79.5
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 4.5e-54 214.5 113 85.0
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 1.0e-53 213.4 113 83.2
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.3e-53 213.0 116 81.0
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 2.2e-53 212.2 112 85.7
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 2.9e-53 211.8 117 80.3
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 3.8e-53 211.5 113 84.1
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 5.0e-53 211.1 116 81.9
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 6.5e-53 210.7 115 80.9
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 8.5e-53 210.3 116 78.4
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 8.5e-53 210.3 116 81.0
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 8.5e-53 210.3 115 81.7
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 1.1e-52 209.9 119 81.5
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 1.1e-52 209.9 113 82.3
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 1.1e-52 209.9 113 82.3
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.5e-52 209.5 116 77.6
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.5e-52 209.5 116 77.6
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 1.5e-52 209.5 118 78.0
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 1.5e-52 209.5 118 80.5
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.9e-52 209.1 116 78.4
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 2.5e-52 208.8 114 80.7
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 3.2e-52 208.4 118 79.7
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 3.2e-52 208.4 116 77.6
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 5.5e-52 207.6 116 77.6
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 5.5e-52 207.6 112 82.1
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 7.2e-52 207.2 115 81.7
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 7.2e-52 207.2 116 76.7
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 7.2e-52 207.2 112 83.0
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 9.4e-52 206.8 112 81.2
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 1.2e-51 206.5 113 81.4
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 1.2e-51 206.5 113 81.4
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 1.2e-51 206.5 112 82.1
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 1.6e-51 206.1 116 77.6
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 1.6e-51 206.1 115 80.0
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 2.1e-51 205.7 116 76.7
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 2.1e-51 205.7 116 76.7
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 2.1e-51 205.7 116 76.7
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 2.1e-51 205.7 116 76.7
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 2.1e-51 205.7 110 81.8
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 2.7e-51 205.3 112 79.5
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 3.6e-51 204.9 116 75.9
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 3.6e-51 204.9 116 76.7
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 3.6e-51 204.9 112 81.2
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 4.7e-51 204.5 116 76.7
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 4.7e-51 204.5 116 76.7
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 6.1e-51 204.1 103 86.4
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 6.1e-51 204.1 114 78.1
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 8.0e-51 203.8 112 79.5
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 1.0e-50 203.4 112 80.4
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 1.8e-50 202.6 112 77.7
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 1.8e-50 202.6 116 75.9
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 1.8e-50 202.6 112 79.5
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 2.3e-50 202.2 112 80.4
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 2.3e-50 202.2 113 79.6
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 3.0e-50 201.8 116 76.7
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 8.8e-50 200.3 116 74.1
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 8.8e-50 200.3 116 74.1
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 8.8e-50 200.3 116 74.1
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 1.2e-49 199.9 115 77.4
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.2e-49 199.9 125 72.8
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.2e-49 199.9 125 72.8
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 1.5e-49 199.5 99 88.9
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 2.0e-49 199.1 116 73.3
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 3.3e-49 198.4 110 77.3
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 4.4e-49 198.0 116 73.3
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 5.7e-49 197.6 116 74.1
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 7.5e-49 197.2 152 63.2
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 1.3e-48 196.4 99 87.9
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 1.7e-48 196.1 112 77.7
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 2.2e-48 195.7 100 86.0
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 2.2e-48 195.7 147 63.9
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 2.8e-48 195.3 110 73.6
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 2.4e-47 192.2 113 77.0
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 2.4e-47 192.2 112 76.8
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.4e-47 192.2 112 76.8
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.4e-47 192.2 112 76.8
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.4e-47 192.2 112 76.8
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.4e-47 192.2 112 76.8
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 5.3e-47 191.0 98 85.7
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 2.0e-46 189.1 110 77.3
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 3.8e-45 184.9 99 81.8
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 5.0e-45 184.5 99 82.8
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 5.0e-45 184.5 115 68.7
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 5.0e-45 184.5 115 68.7
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 6.5e-45 184.1 95 84.2
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 7.2e-44 180.6 112 74.1
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 9.4e-44 180.3 95 83.2
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 4.0e-42 174.9 108 68.5
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 8.8e-42 173.7 114 66.7
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 2.0e-41 172.6 127 63.8
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 2.6e-41 172.2 84 88.1
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 1.8e-39 166.0 92 83.7
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 1.8e-39 166.0 107 63.6
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 2.4e-39 165.6 112 64.3
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 3.1e-39 165.2 108 63.9
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 7.0e-39 164.1 91 83.5
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 2.0e-38 162.5 130 60.8
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 1.9e-36 156.0 97 70.1
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 2.1e-35 152.5 76 86.8
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 6.1e-35 151.0 81 82.7
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 1.4e-34 149.8 78 83.3
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 4.4e-33 144.8 74 82.4
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 3.7e-32 141.7 74 79.7
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 1.2e-30 136.7 78 75.6
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 4.5e-30 134.8 100 56.0
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 1.5e-28 129.8 103 65.0
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 4.3e-28 128.3 92 55.4
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 1.4e-26 123.2 97 64.9
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 5.2e-26 121.3 110 48.2
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.7e-24 116.3 79 69.6
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.1e-23 113.6 80 67.5
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 1.6e-19 99.8 63 65.1
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 1.6e-19 99.8 63 65.1
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 1.6e-19 99.8 63 65.1
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 5.8e-17 91.3 98 42.9
Rhsim12G0090000 Rhododendron simsii HOM05D004582 ORTHO05D005507 1.7e-16 89.7 156 39.1
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 2.9e-16 89.0 60 66.7
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 2.9e-16 89.0 58 65.5
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 3.7e-16 88.6 88 44.3
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 1.6e-14 83.2 80 55.0
Lsat_1_v5_gn_1_108420 Lactuca sativa HOM05D004582 ORTHO05D005507 4.3e-12 75.1 39 82.1
Cpa.g.sc887.1 Carica papaya HOM05D004582 ORTHO05D005507 2.3e-10 69.3 38 78.9
Cfa023443 Carpinus fangiana HOM05D004582 ORTHO05D123741 8.9e-10 67.4 83 34.9
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 3.4e-09 65.5 79 45.6


User provided reference genes

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