Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033012.2 Cucumis melo HOM05D000544 ORTHO05D011529 2.1e-19 97.8 42 100.0
MELO3C029366.2 Cucumis melo HOM05D000544 ORTHO05D011529 1.1e-07 58.9 25 92.0
MELO3C012519.2 Cucumis melo HOM05D000544 ORTHO05D011529 5.3e-07 56.6 25 88.0
MELO3C029849.2 Cucumis melo HOM05D000544 ORTHO05D011529 6.9e-07 56.2 25 84.0
TWI34G1183 Tripterygium wilfordii HOM05D000544 ORTHO05D000479 1.2e-06 55.5 23 91.3
TWI63G0160 Tripterygium wilfordii HOM05D000544 ORTHO05D000479 1.2e-06 55.5 23 91.3
MELO3C033030.2 Cucumis melo HOM05D000544 ORTHO05D011529 2.0e-06 54.7 25 88.0
MELO3C034667.2 Cucumis melo HOM05D000544 ORTHO05D011529 2.0e-06 54.7 25 88.0
VMungo1309G2722 Vigna mungo HOM05D000544 ORTHO05D000479 3.4e-06 53.9 22 86.4
Atru.chr1.3876 Acer truncatum HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Atru.chr1.3898 Acer truncatum HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Actinidia21784 Actinidia chinensis HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Actinidia27574 Actinidia chinensis HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Actinidia32172 Actinidia chinensis HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
ATR0598G275 Amborella trichopoda HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Aqoxy7G01103 Aquilegia oxysepala HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Aqoxy7G04060 Aquilegia oxysepala HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
CSS0014494 Camellia sinensis var. sinensis HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
CSS0027874 Camellia sinensis var. sinensis HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
CSS0030042 Camellia sinensis var. sinensis HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
CANSAT56G0581 Cannabis sativa HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Cpa.g.sc25.95 Carica papaya HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Cpa.g.sc28.95 Carica papaya HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Cfa003547 Carpinus fangiana HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
CiPaw.01G221200 Carya illinoinensis HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
ClCG08G009920 Citrullus lanatus HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
ClCG09G000880 Citrullus lanatus HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
ClCG11G001590 Citrullus lanatus HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Ciclev10026319m.g Citrus clementina HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Haze_16007 Corylus avellana HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
MELO3C011479.2 Cucumis melo HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
MELO3C024365.2 Cucumis melo HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
CsaV3_6G032020 Cucumis sativus L. HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
CsaV3_7G034590 Cucumis sativus L. HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Duzib168G0179 Durio zibethinus HOM05D005173 ORTHO05D006214 4.5e-06 53.5 23 87.0
Duzib168G1976 Durio zibethinus HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Eucgr.C03146 Eucalyptus grandis HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Eucgr.C03252 Eucalyptus grandis HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Glyma.09G068500 Glycine max HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Glyma.13G107700 Glycine max HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Gohir.A13G192300 Gossypium hirsutum HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Gohir.D13G197700 Gossypium hirsutum HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Gorai.013G226400 Gossypium raimondii HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
HanXRQChr10g0312301 Helianthus annuus HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
HanXRQChr15g0497051 Helianthus annuus HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Hma1.2p1_0291F.1_g115260 Hydrangea macrophylla HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Hma1.2p1_0732F.1_g210010 Hydrangea macrophylla HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Lsat_1_v5_gn_4_95061 Lactuca sativa HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Lj8A489T39 Lonicera japonica HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Lj8A497T37 Lonicera japonica HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Lj9A522T70 Lonicera japonica HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
MBI19_g19952_MAGBIO Magnolia biondii HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
MD08G1069100 Malus domestica HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Manes.03G052000 Manihot esculenta HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Manes.11G022400 Manihot esculenta HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Manes.16G083900 Manihot esculenta HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Nn6g35574 Nelumbo nucifera HOM05D000844 ORTHO05D000680 4.5e-06 53.5 23 87.0
Nn8g38740 Nelumbo nucifera HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Nitab4.5_0006105g0010 Nicotiana tabacum HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Oeu002488.1 Olea europaea HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Oeu039940.1 Olea europaea HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
PSO210G1496 Papaver somniferum HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
PSO210G7516 Papaver somniferum HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Phvul.009G229200 Phaseolus vulgaris HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Potri.006G223500 Populus trichocarpa HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Potri.018G050200 Populus trichocarpa HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Prupe.1G406800 Prunus persica HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Prupe.7G203700 Prunus persica HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
QL05p008733 Quercus lobata HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Rhsim08G0236900 Rhododendron simsii HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Sabra06G0172600 Salix brachista HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Sabra18G0047000 Salix brachista HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Sed0012775 Sechium edule HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Sed0017049 Sechium edule HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Sed0017786 Sechium edule HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Sed0026174 Sechium edule HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
SEGI_04848 Sequoiadendron giganteum HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
Thecc.09G081700 Theobroma cacao HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
TWI34G1423 Tripterygium wilfordii HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
TWI63G0261 Tripterygium wilfordii HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
TAR383G0385 Trochodendron aralioides HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
TAR624G1346 Trochodendron aralioides HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
TAR636G0991 Trochodendron aralioides HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
vmacro22215 Vaccinium macrocarpon HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
VMungo0647G0557 Vigna mungo HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
GSVIVG01015122001 Vitis vinifera HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
GSVIVG01016791001 Vitis vinifera HOM05D000544 ORTHO05D000479 4.5e-06 53.5 23 87.0
ATR1089G149 Amborella trichopoda HOM05D000544 ORTHO05D000479 5.8e-06 53.1 23 82.6
COL.COLO4_30784 Corchorus olitorius HOM05D000544 ORTHO05D000479 5.8e-06 53.1 23 82.6
MELO3C034831.2 Cucumis melo HOM05D000544 ORTHO05D011529 5.8e-06 53.1 24 83.3
Dinv05114 Davidia involucrata HOM05D000544 ORTHO05D000479 5.8e-06 53.1 23 82.6
Duzib160G0561 Durio zibethinus HOM05D000544 ORTHO05D000479 5.8e-06 53.1 23 82.6
Duzib235G1350 Durio zibethinus HOM05D000544 ORTHO05D000479 5.8e-06 53.1 23 82.6
FvH4_2g31281 Fragaria vesca HOM05D000544 ORTHO05D000479 5.8e-06 53.1 23 82.6
FAN15G3157 Fragaria x ananassa HOM05D000544 ORTHO05D000479 5.8e-06 53.1 23 82.6
FAN20G3202 Fragaria x ananassa HOM05D000544 ORTHO05D000479 5.8e-06 53.1 23 82.6
FAN27G2875 Fragaria x ananassa HOM05D000544 ORTHO05D000479 5.8e-06 53.1 23 82.6
Nitab4.5_0003874g0010 Nicotiana tabacum HOM05D000544 ORTHO05D000479 5.8e-06 53.1 23 82.6
Oeu000423.1 Olea europaea HOM05D000544 ORTHO05D000479 5.8e-06 53.1 23 82.6
RcHm_v2.0_Chr6g0311511 Rosa chinensis HOM05D000544 ORTHO05D000479 5.8e-06 53.1 23 82.6
RcHm_v2.0_Chr7g0239581 Rosa chinensis HOM05D000544 ORTHO05D000479 5.8e-06 53.1 23 82.6
Thecc.06G117400 Theobroma cacao HOM05D000544 ORTHO05D000479 5.8e-06 53.1 23 82.6
unitig_736.g22785 Utricularia gibba HOM05D000544 ORTHO05D000479 5.8e-06 53.1 23 82.6
GSVIVG01035442001 Vitis vinifera HOM05D000544 ORTHO05D000479 5.8e-06 53.1 23 82.6
MELO3C018318.2 Cucumis melo HOM05D000544 ORTHO05D011529 7.6e-06 52.8 25 84.0
MELO3C031200.2 Cucumis melo HOM05D000544 ORTHO05D011529 7.6e-06 52.8 24 83.3
ECA232G2908 Erigeron canadensis HOM05D000544 ORTHO05D000479 7.6e-06 52.8 23 82.6
Migut.D00946 Erythranthe guttata HOM05D000544 ORTHO05D000479 7.6e-06 52.8 23 82.6
Migut.I01058 Erythranthe guttata HOM05D000544 ORTHO05D000479 7.6e-06 52.8 23 82.6
Nitab4.5_0011681g0030 Nicotiana tabacum HOM05D000544 ORTHO05D000479 7.6e-06 52.8 23 82.6
Atru.chr7.1657 Acer truncatum HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Atru.chr7.1874 Acer truncatum HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Aa31LG1G14160 Aethionema arabicum HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Ah.09g231270 Amaranthus hybridus HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
AL6G32040 Arabidopsis lyrata HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
MSTRG.10527 Avicennia marina HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
MSTRG.10965 Avicennia marina HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
MSTRG.22556 Avicennia marina HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
EL10Ac8g19143 Beta vulgaris HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
CSS0017567 Camellia sinensis var. sinensis HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Carub.0006s1884 Capsella rubella HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
CAN.G3503.1 Capsicum annuum HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
CAN.G825.19 Capsicum annuum HOM05D000544 ORTHO05D003645 1.0e-05 52.4 23 82.6
Cfa003035 Carpinus fangiana HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
CiPaw.03G210600 Carya illinoinensis HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
CiPaw.04G146200 Carya illinoinensis HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
CiPaw.16G067500 Carya illinoinensis HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
CDE06G1127 Ceratophyllum demersum HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
CDE07G2021 Ceratophyllum demersum HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
AUR62025171 Chenopodium quinoa HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
AUR62029006 Chenopodium quinoa HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Cc04_g01490 Coffea canephora HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
COL.COLO4_21116 Corchorus olitorius HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Haze_18133 Corylus avellana HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Haze_25963 Corylus avellana HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
MELO3C035339.2 Cucumis melo HOM05D000544 ORTHO05D166608 1.0e-05 52.4 23 87.0
Duzib150G1426 Durio zibethinus HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
ECA234G4804 Erigeron canadensis HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Migut.J00956 Erythranthe guttata HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Migut.L01540 Erythranthe guttata HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Eucgr.C03569 Eucalyptus grandis HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Thhalv10014469m.g Eutrema salsugineum HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Gohir.A06G084800 Gossypium hirsutum HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Gohir.D06G084000 Gossypium hirsutum HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Gorai.010G097500 Gossypium raimondii HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
HanXRQChr10g0319571 Helianthus annuus HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Hma1.2p1_0672F.1_g200810 Hydrangea macrophylla HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Lsat_1_v5_gn_5_142000 Lactuca sativa HOM05D005173 ORTHO05D006214 1.0e-05 52.4 23 82.6
Lalb_Chr12g0200001 Lupinus albus HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
MD15G1052900 Malus domestica HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Manes.16G098100 Manihot esculenta HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Nitab4.5_0000024g0110 Nicotiana tabacum HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Nitab4.5_0001488g0150 Nicotiana tabacum HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Nitab4.5_0007106g0020 Nicotiana tabacum HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
PSO063G3747 Papaver somniferum HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
PSO421G0613 Papaver somniferum HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Phvul.001G039500 Phaseolus vulgaris HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Potri.006G145300 Populus trichocarpa HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
PGR142G1685 Punica granatum HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
QL02p000366 Quercus lobata HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
QL02p061258 Quercus lobata HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
QL02p061371 Quercus lobata HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Solyc06g062850.3 Solanum lycopersicum HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
Sopen06g022310 Solanum pennellii HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
PGSC0003DMG400004887 Solanum tuberosum HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
SGA_v2.0_scaffold21G09460 Striga asiatica HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
unitig_747.g21281 Utricularia gibba HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6
VMungo1383G2230 Vigna mungo HOM05D000544 ORTHO05D000479 1.0e-05 52.4 23 82.6


User provided reference genes

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