Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C032670.2 Cucumis melo HOM05D011747 ORTHO05D007013 3.9e-232 807.7 407 100.0
MELO3C029159.2 Cucumis melo HOM05D011747 ORTHO05D014199 7.1e-32 142.5 79 87.3
MELO3C034834.2 Cucumis melo HOM05D011747 ORTHO05D014199 1.6e-31 141.4 79 87.3
MELO3C031447.2 Cucumis melo HOM05D011747 ORTHO05D014199 1.5e-29 134.8 80 85.0
MELO3C031279.2 Cucumis melo HOM05D011747 ORTHO05D014199 5.6e-29 132.9 79 82.3
MELO3C030206.2 Cucumis melo HOM05D011747 ORTHO05D014199 7.3e-29 132.5 80 78.8
MELO3C029990.2 Cucumis melo HOM05D011747 ORTHO05D014199 1.5e-26 124.8 79 78.5
MELO3C032744.2 Cucumis melo HOM05D011747 ORTHO05D167624 1.7e-25 121.3 72 81.9
MELO3C031393.2 Cucumis melo HOM05D005653 ORTHO05D005467 1.4e-24 118.2 105 66.7
MELO3C022321.2 Cucumis melo HOM05D005653 ORTHO05D007013 3.5e-15 87.0 63 74.6
CsaV3_6G008140 Cucumis sativus L. HOM05D005653 ORTHO05D007013 3.5e-15 87.0 63 74.6
ClCG06G002070 Citrullus lanatus HOM05D005653 ORTHO05D007013 5.1e-14 83.2 48 83.3
ATR0561G080 Amborella trichopoda HOM05D005653 ORTHO05D007013 8.7e-14 82.4 51 72.5
Sed0008245 Sechium edule HOM05D005653 ORTHO05D007013 1.5e-13 81.6 63 66.7
AL1G41470 Arabidopsis lyrata HOM05D005653 ORTHO05D007013 2.5e-13 80.9 51 76.5
AT1G27980 Arabidopsis thaliana HOM05D005653 ORTHO05D007013 2.5e-13 80.9 51 76.5
Carub.0001s2643 Capsella rubella HOM05D005653 ORTHO05D007013 2.5e-13 80.9 51 76.5
Ca_07130_v3 Cicer arietinum L. HOM05D005653 ORTHO05D007013 1.3e-12 78.6 48 77.1
SGA_v2.0_scaffold46G17390 Striga asiatica HOM05D005653 ORTHO05D007013 1.3e-12 78.6 50 70.0
BolC3t19717H Brassica oleracea HOM05D005653 ORTHO05D007013 1.6e-12 78.2 51 72.5
Cfa009387 Carpinus fangiana HOM05D005653 ORTHO05D007013 1.6e-12 78.2 49 73.5
Thhalv10009378m.g Eutrema salsugineum HOM05D005653 ORTHO05D007013 1.6e-12 78.2 51 70.6
Glyma.02G097200 Glycine max HOM05D005653 ORTHO05D007013 1.6e-12 78.2 48 72.9
Manes.12G008600 Manihot esculenta HOM05D005653 ORTHO05D007013 1.6e-12 78.2 48 77.1
Sp1g24170 Schrenkiella parvula HOM05D005653 ORTHO05D007013 1.6e-12 78.2 51 74.5
CARHR027410 Cardamine hirsuta HOM05D005653 ORTHO05D007013 2.1e-12 77.8 51 70.6
Glyma.18G284300 Glycine max HOM05D005653 ORTHO05D007013 2.1e-12 77.8 48 72.9
Lj1g0002640 Lotus japonicus HOM05D005653 ORTHO05D007013 2.1e-12 77.8 65 60.0
Thecc.02G202100 Theobroma cacao HOM05D005653 ORTHO05D007013 2.1e-12 77.8 51 70.6
Psat3g188000 Pisum sativum HOM05D005653 ORTHO05D007013 2.8e-12 77.4 48 77.1
A08p25960 Brassica napus HOM05D005653 ORTHO05D007013 3.7e-12 77.0 51 70.6
C03p74690 Brassica napus HOM05D005653 ORTHO05D007013 3.7e-12 77.0 51 70.6
BraA08t34547Z Brassica rapa HOM05D005653 ORTHO05D007013 3.7e-12 77.0 51 70.6
Migut.K01002 Erythranthe guttata HOM05D005653 ORTHO05D007013 3.7e-12 77.0 51 68.6
Duzib268G1459 Durio zibethinus HOM05D005653 ORTHO05D007013 4.8e-12 76.6 48 75.0
Lalb_Chr10g0092041 Lupinus albus HOM05D005653 ORTHO05D007013 6.2e-12 76.3 48 72.9
Medtr7g022310 Medicago truncatula HOM05D005653 ORTHO05D007013 6.2e-12 76.3 48 75.0
Nn4g22260 Nelumbo nucifera HOM05D005653 ORTHO05D007013 6.2e-12 76.3 48 75.0
Potri.003G168800 Populus trichocarpa HOM05D005653 ORTHO05D007013 6.2e-12 76.3 48 75.0
Sabra03G0123700 Salix brachista HOM05D005653 ORTHO05D007013 6.2e-12 76.3 48 75.0
SalBow2G0115 Salvia bowleyana HOM05D005653 ORTHO05D007013 6.2e-12 76.3 51 68.6
Haze_12446 Corylus avellana HOM05D005653 ORTHO05D007013 8.2e-12 75.9 48 72.9
Eucgr.B03521 Eucalyptus grandis HOM05D005653 ORTHO05D007013 8.2e-12 75.9 51 66.7
PGR102G3026 Punica granatum HOM05D005653 ORTHO05D007013 8.2e-12 75.9 48 70.8
THA.LOC104820527 Tarenaya hassleriana HOM05D005653 ORTHO05D007013 8.2e-12 75.9 51 70.6
unitig_26.g10407 Utricularia gibba HOM05D005653 ORTHO05D007013 1.1e-11 75.5 51 70.6
Aa31sc146G110 Aethionema arabicum HOM05D005653 ORTHO05D007013 1.4e-11 75.1 51 66.7
Cc11_g17180 Coffea canephora HOM05D005653 ORTHO05D007013 1.4e-11 75.1 48 70.8
COL.COLO4_05009 Corchorus olitorius HOM05D005653 ORTHO05D007013 1.4e-11 75.1 48 70.8
Nn1g00005 Nelumbo nucifera HOM05D005653 ORTHO05D007013 1.4e-11 75.1 48 72.9
Nn1g02921 Nelumbo nucifera HOM05D005653 ORTHO05D007013 1.4e-11 75.1 48 72.9
CiPaw.05G107200 Carya illinoinensis HOM05D005653 ORTHO05D007013 1.8e-11 74.7 48 68.8
Gohir.A01G153900 Gossypium hirsutum HOM05D005653 ORTHO05D007013 1.8e-11 74.7 48 72.9
Gohir.D01G100300 Gossypium hirsutum HOM05D005653 ORTHO05D007013 1.8e-11 74.7 48 72.9
Gorai.002G181300 Gossypium raimondii HOM05D005653 ORTHO05D007013 1.8e-11 74.7 48 72.9
Lj3A1072T24 Lonicera japonica HOM05D005653 ORTHO05D007013 1.8e-11 74.7 46 76.1
MD13G1122300 Malus domestica HOM05D005653 ORTHO05D007013 1.8e-11 74.7 48 70.8
RcHm_v2.0_Chr4g0429841 Rosa chinensis HOM05D005653 ORTHO05D007013 1.8e-11 74.7 48 68.8
Zm00001eb334070 Zea mays HOM05D005653 ORTHO05D007013 1.8e-11 74.7 66 59.1
arahy.Tifrunner.gnm1.ann1.8E8WMD Arachis hypogaea HOM05D005653 ORTHO05D007013 2.4e-11 74.3 48 68.8
arahy.Tifrunner.gnm1.ann1.K5AHSV Arachis hypogaea HOM05D005653 ORTHO05D007013 2.4e-11 74.3 48 68.8
Ciclev10031168m.g Citrus clementina HOM05D005653 ORTHO05D007013 2.4e-11 74.3 53 66.0
DCAR_024662 Daucus carota HOM05D005653 ORTHO05D007013 2.4e-11 74.3 48 68.8
MBI11_g05337_MAGBIO Magnolia biondii HOM05D005653 ORTHO05D007013 2.4e-11 74.3 48 68.8
Nitab4.5_0000340g0070 Nicotiana tabacum HOM05D005653 ORTHO05D007013 2.4e-11 74.3 53 66.0
PSO017G4941 Papaver somniferum HOM05D005653 ORTHO05D007013 2.4e-11 74.3 48 72.9
Phvul.008G017200 Phaseolus vulgaris HOM05D005653 ORTHO05D007013 2.4e-11 74.3 48 68.8
TWI18G0855 Tripterygium wilfordii HOM05D005653 ORTHO05D007013 2.4e-11 74.3 51 68.6
VMungo1383G3612 Vigna mungo HOM05D005653 ORTHO05D007013 2.4e-11 74.3 65 55.4
CANSAT01G0083 Cannabis sativa HOM05D005653 ORTHO05D007013 3.1e-11 73.9 48 70.8
Lsat_1_v5_gn_8_147520 Lactuca sativa HOM05D005653 ORTHO05D007013 3.1e-11 73.9 51 62.7
QL03p051746 Quercus lobata HOM05D005653 ORTHO05D007013 3.1e-11 73.9 48 70.8
SHI17985 Sapria himalayana HOM05D005653 ORTHO05D007013 3.1e-11 73.9 51 66.7
GSVIVG01010526001 Vitis vinifera HOM05D005653 ORTHO05D007013 3.1e-11 73.9 48 70.8
Atru.BG.292.p Acer truncatum HOM05D005653 ORTHO05D007013 4.1e-11 73.6 46 73.9
FvH4_4g23470 Fragaria vesca HOM05D005653 ORTHO05D007013 4.1e-11 73.6 48 66.7
FAN07G0042 Fragaria x ananassa HOM05D005653 ORTHO05D007013 4.1e-11 73.6 48 66.7
FAN12G1333 Fragaria x ananassa HOM05D005653 ORTHO05D007013 4.1e-11 73.6 48 66.7
Prupe.1G222900 Prunus persica HOM05D005653 ORTHO05D007013 4.1e-11 73.6 48 70.8
TAR374G1158 Trochodendron aralioides HOM05D005653 ORTHO05D007013 4.1e-11 73.6 48 70.8
CDE05G3552 Ceratophyllum demersum HOM05D005653 ORTHO05D007013 5.3e-11 73.2 65 53.8
Dinv17587 Davidia involucrata HOM05D005653 ORTHO05D007013 5.3e-11 73.2 47 72.3
Os01g0100900 Oryza sativa ssp. japonica HOM05D005653 ORTHO05D007013 5.3e-11 73.2 48 70.8
Sabra01G0042500 Salix brachista HOM05D005653 ORTHO05D007013 6.9e-11 72.8 48 70.8
HPP92_006272 Vanilla planifolia HOM05D005653 ORTHO05D007013 6.9e-11 72.8 48 68.8
CSS0037525 Camellia sinensis var. sinensis HOM05D005653 ORTHO05D007013 9.0e-11 72.4 48 66.7
CSS0048785 Camellia sinensis var. sinensis HOM05D005653 ORTHO05D007013 9.0e-11 72.4 48 66.7
PSO478G2696 Papaver somniferum HOM05D005653 ORTHO05D007013 9.0e-11 72.4 48 70.8
Hund06105 Selenicereus undatus HOM05D005653 ORTHO05D007013 9.0e-11 72.4 46 67.4
PGSC0003DMG400019810 Solanum tuberosum HOM05D005653 ORTHO05D007013 9.0e-11 72.4 48 70.8
Actinidia39799 Actinidia chinensis HOM05D005653 ORTHO05D007013 1.2e-10 72.0 48 66.7
CAN.G789.3 Capsicum annuum HOM05D005653 ORTHO05D007013 1.2e-10 72.0 48 66.7
SEGI_37890 Sequoiadendron giganteum HOM05D005653 ORTHO05D007013 1.2e-10 72.0 53 60.4
Sopen05g011500 Solanum pennellii HOM05D005653 ORTHO05D007013 1.2e-10 72.0 48 68.8
Aqoxy5G03294 Aquilegia oxysepala HOM05D005653 ORTHO05D007013 1.5e-10 71.6 53 62.3
Ah.03g135980 Amaranthus hybridus HOM05D005653 ORTHO05D007013 2.0e-10 71.2 43 74.4
Peaxi162Scf00128g01533 Petunia axillaris HOM05D005653 ORTHO05D007013 2.0e-10 71.2 48 68.8
Rhsim12G0094700 Rhododendron simsii HOM05D005653 ORTHO05D007013 2.0e-10 71.2 48 64.6
Solyc05g015860.4 Solanum lycopersicum HOM05D005653 ORTHO05D007013 2.6e-10 70.9 48 66.7
HanXRQChr08g0209891 Helianthus annuus HOM05D005653 ORTHO05D007013 3.4e-10 70.5 48 62.5
EL10Ac6g13536 Beta vulgaris HOM05D005653 ORTHO05D007013 5.8e-10 69.7 63 55.6
AUR62005648 Chenopodium quinoa HOM05D005653 ORTHO05D007013 7.6e-10 69.3 48 64.6
HanXRQChr08g0209781 Helianthus annuus HOM05D005653 ORTHO05D007013 7.6e-10 69.3 48 62.5
vmacro16096 Vaccinium macrocarpon HOM05D005653 ORTHO05D007013 7.6e-10 69.3 48 62.5
AUR62028902 Chenopodium quinoa HOM05D005653 ORTHO05D007013 2.2e-09 67.8 48 64.6
MELO3C031272.2 Cucumis melo HOM05D011747 ORTHO05D167059 1.1e-08 65.5 50 62.0
SMO117G0322 Selaginella moellendorffii HOM05D005653 ORTHO05D007013 1.9e-08 64.7 52 63.5
ECA233G0831 Erigeron canadensis HOM05D005653 ORTHO05D007013 2.5e-08 64.3 81 42.0
MELO3C032011.2 Cucumis melo HOM05D011747 ORTHO05D014199 6.1e-07 59.7 32 87.5
Mapoly0064s0066 Marchantia polymorpha HOM05D005653 ORTHO05D007013 7.9e-07 59.3 42 57.1
MELO3C033883.2 Cucumis melo HOM05D011747 ORTHO05D166332 1.0e-06 58.9 42 64.3
Potri.001G059001 Populus trichocarpa HOM05D005653 ORTHO05D007013 6.7e-06 56.2 34 73.5
MELO3C026657.2 Cucumis melo HOM05D011747 ORTHO05D014199 8.7e-06 55.8 38 73.7


User provided reference genes

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